RetrogeneDB - Retrocopy retro_meug

                        
>retro_meug_1409
AAGAGAGTCTCTTTGGCTCAGGCCAAGATTGAGAAGATCAAGGGCAGCAAGAAAGCAATCAAGGTGTTCTCTAGTGCCAA

GTATCCAACTCCAGAGAAAGTGCAGGAGAACAACTTCATCTTTGCAGGAGCCCAGGATCCTGGGTCTCAGAGGAGCCTCC

GACACAAGATCCAGAGCAGACATTGACACCTAGAAGAAACGGTCTTGCAGAAAAAAATGGAAGTACTTCCCCGTGTGTGA

GCACCAGACCCCAGGCTGAAGATAAGGCCGAGGAGGAACTTGGGGGCCTCCCCAGCAGCATCAAACTCCCTCAGCTCGTT

GCTGTTTTTCAACACCACTGAGAACTTGTACAAGAAATATGTCTTTCTGGACCCTCTGGCTGGGGCTGTGATAAAGACTC

ATGTGATACTAGAGATAGAGACTGAGAAGTTGTTTGATGCCCCCTTATCTACCAGCAAAAGGGAGCAACTGGAGCAGCAG

GTAGCAGAGAATTACTTTTATGTACCAGATCTGGGCCAGGTGCCTGAGATTGATGTGCCATCCTACCTTCCTGACCTTCC

TGGCATTGCTGATGATCTCATGTACAGTGCTGATCTAGGCCCTGGCATAGCACCTTCTGCCCCTGGCACCATTCCTGAGC

TACTCACCTTCAACACTGAACTTGCCTAGCCATTTAAGTCAGAAATAGATGGTGGCATGCCAGTAACACGCCCACCACCT

CCACTTCCACCACCTCCTCTACCAGCGCCTGTGGTATTGATCAGTGCACCTCCACCCCCTCCTCTGTCCCAGTTCACCTC

AGCCCAACCAGCCAGTGAGGATAACAGCAGCATGCCTCCTTCAGGTGCAGTTCACATATCCCCAAAAGAAGTAGTGGATC

CTTCCAGATGGGCAACCCTGCTAAAGTCAATTCACCAGGCCGAGGTATTGGCAAGGCCAAGCTACAGAGTATGAAGGAGT

GAAAGCTGCAGAAAAAGAGGCAGAAAGAACAGGAACAAGTGAGAGTCACAAGCCAAGGTGGTGACCTAATGTTAGATCTT

TTCAACAAACTAGTCATGAAGTGCAAAGGCATCTCAGGGAAAGAACCTGGGGCAAGCACTGGGGAAGGCCCTGGGGGAGC

CTTTGCCAGAATATCAGACTCAATTCCACCCCTACCAATGCTGCAACAACCACCTGGAGAGGAAGATGAGGATGAGTGGG

AGTCA

ORF - retro_meug_1409 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	82.06 %
Parental protein coverage:	96.16 %
Number of stop codons detected:	3
Number of frameshifts detected:	3

Retrocopy - Parental Gene Alignment:

                                ParentalERVSLAQAKIEKIKGSKKAIKVFSSAKYPAPDRLQEYNSIFAGAQDPGSQRRLRHKIQSKHRPLDERALQ
.RVSLAQAKIEKIKGSKKAIKVFSSAKYP.P...QE.N.IFAGAQDPGSQR.LRHKIQS.H..L.E..LQ
RetrocopyKRVSLAQAKIEKIKGSKKAIKVFSSAKYPTPEKVQENNFIFAGAQDPGSQRSLRHKIQSRH*HLEETVLQ
ParentalEKLKYFP-VCVSTRPQPEDEAEEGLGGLPSNI-NSLSSLLLFNTTENLYKKYVFLDPLAGAVTKTHVTLG
.K....P..CVSTRPQ.ED.AEE.LGGLPS.I.NSLSSLL.FNTTENLYKKYVFLDPLAGAV.KTHV.L.
RetrocopyKKMEVLP<PCVSTRPQAEDKAEEELGGLPSSI>NSLSSLLFFNTTENLYKKYVFLDPLAGAVIKTHVILE
ParentalTETEKLFDAPLSISKREQLEQQVAENYFYVPDLGQVPEINVPSYLPDLPGIADDLMYSADLGPGIAPSAP
.ETEKLFDAPLS.SKREQLEQQVAENYFYVPDLGQVPEI.VPSYLPDLPGIADDLMYSADLGPGIAPSAP
RetrocopyIETEKLFDAPLSTSKREQLEQQVAENYFYVPDLGQVPEIDVPSYLPDLPGIADDLMYSADLGPGIAPSAP
ParentalGTIPELPTFNTELAEPFKPELDGDTPVAPPPPPPLPPPPPPAPVVLVSAPPPPPLPQLTSA-ASQEDNSS
GTIPEL.TFNTELA.PFK.E.DG..PV...PPPPLPPPP.PAPVVL.SAPPPPPL.Q.TSA....EDNSS
RetrocopyGTIPELLTFNTELA*PFKSEIDGGMPVT-RPPPPLPPPPLPAPVVLISAPPPPPLSQFTSAQPASEDNSS
ParentalMSPS--VHIPPKEVVDPSSGRATLLESIRQA-GGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMS
M.PS..VHI.PKEVVDPS...ATLL.SI.QA..GIGKAKL.S.KE.KL.KK.QKEQEQVR.TSQGGDLM.
RetrocopyMPPSGAVHISPKEVVDPSRW-ATLLKSIHQA<RGIGKAKLQSMKE*KLQKKRQKEQEQVRVTSQGGDLML
ParentalDLFNKLVMRRKGISGKGPGASTGEGPGGAFARMSDSIPPLPMLQPPPGEEDEDEWES
DLFNKLVM..KGISGK.PGASTGEGPGGAFAR.SDSIPPLPMLQ.PPGEEDEDEWES
RetrocopyDLFNKLVMKCKGISGKEPGASTGEGPGGAFARISDSIPPLPMLQQPPGEEDEDEWES

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_1409 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_1409 was not experimentally validated.

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000015743	1 retrocopy	retro_cfam_843,
Macropus eugenii	ENSMEUG00000003621	1 retrocopy	retro_meug_1409 ,

	RetrogeneDB ID:	retro_meug_1409
Retrocopy location	Organism:	*Wallaby (Macropus eugenii)*
	Coordinates:	Scaffold395197:1813..3018(+)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	WASH4P
	Ensembl ID:	ENSMEUG00000003621
	Aliases:	None
	Description:	WAS protein family homolog 4 pseudogene [Source:HGNC Symbol;Acc:14126]

Parental	ERVSLAQAKIEKIKGSKKAIKVFSSAKYPAPDRLQEYNSIFAGAQDPGSQRRLRHKIQSKHRPLDERALQ
	.RVSLAQAKIEKIKGSKKAIKVFSSAKYP.P...QE.N.IFAGAQDPGSQR.LRHKIQS.H..L.E..LQ
Retrocopy	KRVSLAQAKIEKIKGSKKAIKVFSSAKYPTPEKVQENNFIFAGAQDPGSQRSLRHKIQSRH*HLEETVLQ

Parental	EKLKYFP-VCVSTRPQPEDEAEEGLGGLPSNI-NSLSSLLLFNTTENLYKKYVFLDPLAGAVTKTHVTLG
	.K....P..CVSTRPQ.ED.AEE.LGGLPS.I.NSLSSLL.FNTTENLYKKYVFLDPLAGAV.KTHV.L.
Retrocopy	KKMEVLP<PCVSTRPQAEDKAEEELGGLPSSI>NSLSSLLFFNTTENLYKKYVFLDPLAGAVIKTHVILE

Parental	TETEKLFDAPLSISKREQLEQQVAENYFYVPDLGQVPEINVPSYLPDLPGIADDLMYSADLGPGIAPSAP
	.ETEKLFDAPLS.SKREQLEQQVAENYFYVPDLGQVPEI.VPSYLPDLPGIADDLMYSADLGPGIAPSAP
Retrocopy	IETEKLFDAPLSTSKREQLEQQVAENYFYVPDLGQVPEIDVPSYLPDLPGIADDLMYSADLGPGIAPSAP

Parental	GTIPELPTFNTELAEPFKPELDGDTPVAPPPPPPLPPPPPPAPVVLVSAPPPPPLPQLTSA-ASQEDNSS
	GTIPEL.TFNTELA.PFK.E.DG..PV...PPPPLPPPP.PAPVVL.SAPPPPPL.Q.TSA....EDNSS
Retrocopy	GTIPELLTFNTELA*PFKSEIDGGMPVT-RPPPPLPPPPLPAPVVLISAPPPPPLSQFTSAQPASEDNSS

Parental	MSPS--VHIPPKEVVDPSSGRATLLESIRQA-GGIGKAKLRSVKERKLEKKKQKEQEQVRATSQGGDLMS
	M.PS..VHI.PKEVVDPS...ATLL.SI.QA..GIGKAKL.S.KE.KL.KK.QKEQEQVR.TSQGGDLM.
Retrocopy	MPPSGAVHISPKEVVDPSRW-ATLLKSIHQA<RGIGKAKLQSMKE*KLQKKRQKEQEQVRVTSQGGDLML

Parental	DLFNKLVMRRKGISGKGPGASTGEGPGGAFARMSDSIPPLPMLQPPPGEEDEDEWES
	DLFNKLVM..KGISGK.PGASTGEGPGGAFAR.SDSIPPLPMLQ.PPGEEDEDEWES
Retrocopy	DLFNKLVMKCKGISGKEPGASTGEGPGGAFARISDSIPPLPMLQQPPGEEDEDEWES

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_meug_1409