RetrogeneDB ID: | retro_meug_1454 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold410:51133..51848(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000003011 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MC3R | ||
| Ensembl ID: | ENSMEUG00000009981 | ||
| Aliases: | None | ||
| Description: | melanocortin 3 receptor [Source:HGNC Symbol;Acc:6931] |
Retrocopy-Parental alignment summary:
>retro_meug_1454
AAGAGCAAGCCATCACCCTGTGAGCAAGTGAACATAGCTGTTGAGGTGTTCCTGACTCTTGGTATCATCAGCCTGTTGGA
GAACATTTTAGTCATCGGTGCCATAGTTAAGAACAAGAACTTGCACTCTCCCATGTATTTCTTTGTATGTAACTTAGCTG
TGGCAGACATGCTTGTGAGTGTGTCCAATGCCTGGGAGACCATCACAATATACTTAATAAACAATAAACATCTGGTGATA
GAAGATGCTTTTGTGCGCCATATAGACAATGTATTTGATTCTATGATCTGCATCTCTGTTATGGCCTCCATGTGCAGTTT
GTTGGCCATCGCCGTGGACAGGTATGTCACCATCTTCTATGCCCTGCGCTACCACAACATCATGACAGTGAAGCGATCAG
GGATCATCATTGTATGCATCTGGGTCTTTTGTACTAGTTGTGGCATCATCTTCATTCTTTACTATGAGTCTACTTATGTC
GTCATTTGTCTCATTACCATGTTTTTCACCATGCTATTCCTTATGGTATCTCTATATATCCATATGTTTCTCCTGGCTCG
GACTCATGTGAAGCAGATTGCAGCCTTGTCTGGCTATAGTTCAGTCCGGCAGAGGATCAGCATGAAGGGGCCATCACCCT
GACATGTTACTTGGTGTTTTTATTGTTTGCTGGGCTCCATTTTTCCTCCACCTCATCCTAATGATTTCTTGTCCC
ORF - retro_meug_1454 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.83 % |
| Parental protein coverage: | 68.88 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | QSSPGFCEQVFIKSEIFLTLGIISLLENILVILAVLKNGNLHSPMYFFLCSLAVAHMLVSVSXXXXXXXX |
| .S.P..CEQV.I..E.FLTLGIISLLENILVI.A..KN.NLHSPMYFF.C.LAVA.MLVSVS........ | |
| Retrocopy | KSKPSPCEQVNIAVEVFLTLGIISLLENILVIGAIVKNKNLHSPMYFFVCNLAVADMLVSVSNAWETITI |
| Parental | XXXXXXXXXFDDQLIQYMDNVFDSMICISLVASICNLLVIAIDRYITIFYALRYHSIMTVKKAITLIGAI |
| ...........D......DNVFDSMICIS..AS.C.LL.IA.DRY.TIFYALRYH.IMTVK.....I..I | |
| Retrocopy | YLINNKHLVIEDAFVRHIDNVFDSMICISVMASMCSLLAIAVDRYVTIFYALRYHNIMTVKRSGIIIVCI |
| Parental | WVCCFICGIMFIIYSESKTVIVCLVTMFFAMLLLMATLYMHMFLFARLHVKRIAALPADGVMHQHTCMK- |
| WV.C..CGI.FI.Y.ES..V..CL.TMFF.ML.LM..LY.HMFL.AR.HVK.IAAL.......Q...MK. | |
| Retrocopy | WVFCTSCGIIFILYYESTYVVICLITMFFTMLFLMVSLYIHMFLLARTHVKQIAALSGYSSVRQRISMK< |
| Parental | GAVTIT-ILLGVFIFCWAPFFLHLILIITCP |
| GA.T.T..LLGVFI.CWAPFFLHLIL.I.CP | |
| Retrocopy | GAITLT<MLLGVFIVCWAPFFLHLILMISCP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1454 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1454 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000009981 | 1 retrocopy |
retro_meug_1454 ,
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