RetrogeneDB ID: retro_meug_1490

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold423509:3122..3559(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000003433
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000010554
• Aliases: None
• Description: None

Sequence

>retro_meug_1490
AATTGTTCTGCCATGCACACACGCCAGGCACTCTGCTGCAAGATGTCTGTGGAGTACGACAAGTTCATCGCGTCAGAAAG
GAAAAGGCTCTGCCATGTGGATGGTAATAATTATGTGAACTCAAAAGGGCTCTTGCAGTTACTCTCTGGTTTCTCCCCAA
GTCAGGATGTCTACGTGGGGGAACCTAGTCTGGACCACTCTCTTGAGGCAGCTGACCGAGCCCAGGGACGTGGAACTGCA
TCTACAGTCAAATTCTGGTTTGCTACAGGAGGAGCTGGGTTCTGCATCAGCAGAGGTCTTGCCTTCAGAATGAGTCCTTG
GGTCAGCCTGGGCAACTTCATCAGCACTGCTGAGAAAGCCAGACTTCCTGATGACTGCACCATTGGTATATCACTGAAGC
ACTGCTGCAAGTGAAACTATTGCATAGTTTCCACTCT

Alignment

ORF - retro_meug_1490 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.58 %
• Parental protein coverage: 79.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NCSAMHTRQALCCKMSVEYDKFIESGRKWFCHVDDDNYVNSKGLLQLLSGFSPSQDVYVGRPSLDHPIEA
          NCSAMHTRQALCCKMSVEYDKFI.S.RK..CHVD..NYVNSKGLLQLLSGFSPSQDVYVG.PSLDH..EA
Retrocopy NCSAMHTRQALCCKMSVEYDKFIASERKRLCHVDGNNYVNSKGLLQLLSGFSPSQDVYVGEPSLDHSLEA

Parental  ADRGQGSGTASTVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAEKVRLPDDCTIG-YIIEGLLQVK
          ADR.QG.GTASTVKFWFATGGAGFCISRGLA..MSPW.SLGNFISTAEK.RLPDDCTIG.YI.E.LLQVK
Retrocopy ADRAQGRGTASTVKFWFATGGAGFCISRGLAFRMSPWVSLGNFISTAEKARLPDDCTIG<YITEALLQVK

Parental  LLHSTLFHS
          LLHS..FHS
Retrocopy LLHS--FHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1490 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1490 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010554	1 retrocopy	retro_meug_1490 ,