RetrogeneDB ID: retro_meug_1528

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold43727:10272..11047(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CERS2
• Ensembl ID: ENSMEUG00000006577
• Aliases: None
• Description: ceramide synthase 2 [Source:HGNC Symbol;Acc:14076]

Sequence

>retro_meug_1528
GCTTCCAAGATGCTGCAGACTCTATATGATTACTTCTGGTGGGAGTAAGTGTGGCTGCCTATGAACCTGACCTGGGCTGA
CCTGGAGGACCATGATGGGCACGTCTATGCCAAAGCTTCTGACCTTTACGTCACCTAGCCCCTCGCCTTACTCTTCCTCA
TTGTCAGATAATTCTTTGAGATTTATTTGGCAACACCGCTGGCTACCCTCCTAAATATGAAGGAGAAGACTCGACTTTGA
GCATCCCCCAACCCAACTTTGGAGAATTTTTATTGTACCGGTGGCAAACACCACAAATAGGCAGAGGTGGAGTTCTTGTC
TCAGCCGAGTGGGCTCTCAAGCTGTCAGGTGGAGCCATGGTTCCACAGATGCCAAAATCAGGACTGGCCAATCCTGCTCA
AGAAATTCCGGGAGGGCACCTTTTATCTTATTGCTTTTATTGCTGGCATGGCTGTCATTGTGGATAAACCTTGGTTCCAT
GACATGAAGGAAGTATTAAAAGGTTATCCCATACAGTCCACCATCCCTTCCCAGTACTGGTATTACATGATCAAACTCTC
CTTTTACTGGTCCCTACTCTTCAGTATTGCTTCTGATGTTAAACTGAAAGGATTTCAAAGAGCAGGTGATCCACCATGTG
ACCACCATCATCCTCATCAGCTTCTCCTGGTTTGCCGACTACATCTGGGCAGGGACGCTCATCATGGCTCTCCATGACTT
CTCTGACTACCTGCTAGAATCAACCAAGATGTTTAATTATGCCAGATGGAAAAAC

Alignment

ORF - retro_meug_1528 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.65 %
• Parental protein coverage: 65.83 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AGRMLQTLYDYFWWERLWLPVNLTWADLEDRDGRVYAKASDLYITLPLALLFLIVRYFFEIYVATPLAAL
          A..MLQTLYDYFWWE..WLP.NLTWADLED.DG.VYAKASDLY.T.PLALLFLIVR.FFEIY.ATPLA.L
Retrocopy ASKMLQTLYDYFWWE*VWLPMNLTWADLEDHDGHVYAKASDLYVT*PLALLFLIVR*FFEIYLATPLATL

Parental  LNVKEKTRLRASPNPTLENFYCTSGKHPKQAEVELLSRQSGLSSRQVERWFRRRRNQDRPSLLKKFREAS
          LN.KEKTRL.ASPNPTLENFYCT.GKH.K.AEVE.LS..SGLSS.QVE.WF.R..NQD.P.LLKKFRE..
Retrocopy LNMKEKTRL*ASPNPTLENFYCTGGKHHK*AEVEFLSQPSGLSSCQVEPWFHRCQNQDWPILLKKFREG-

Parental  WRFTFYLIAFIAGMAVIVDKPWFYDMKEVWKGYPIQSTIPSQYWYYMIELSFYWSLLFSIASDVKR-KDF
          ...TFYLIAFIAGMAVIVDKPWF.DMKEV.KGYPIQSTIPSQYWYYMI.LSFYWSLLFSIASDVK..KDF
Retrocopy ---TFYLIAFIAGMAVIVDKPWFHDMKEVLKGYPIQSTIPSQYWYYMIKLSFYWSLLFSIASDVKL>KDF

Parental  KEQVIHHVATIILISFSWFANYIRAGTLIMALHDSSDYLLESAKMFNYAGWKN
          KEQVIHHV.TIILISFSWFA.YI.AGTLIMALHD.SDYLLES.KMFNYA.WKN
Retrocopy KEQVIHHVTTIILISFSWFADYIWAGTLIMALHDFSDYLLESTKMFNYARWKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1528 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1528 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000006577	1 retrocopy	retro_meug_1528 ,