RetrogeneDB ID: retro_meug_1661

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold5161:25244..25907(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC130
• Ensembl ID: ENSMEUG00000013695
• Aliases: None
• Description: coiled-coil domain containing 130 [Source:HGNC Symbol;Acc:28118]

Sequence

>retro_meug_1661
CATGATTCTCTCAATCGATACTACCACAGCCACCCACTTTGGGAGAGGGCATGGAAACTTTCACAGGCCATTCTTGTCGT
CAGATTTGAGATGCTCTGTAGCATCTGGTGTGATGGCTGTAAGAATCACATTGGCATGGGCATTTGTTACAATGCTGAAA
AAAAGGTTGGCAATTATTACACAACCCCAATCTACAGGTTCAGAATGAAATGTCACCTCTGTGTCAACTGCATCGAGATG
CAGAGGGATCCTGTCAGTTGTGACTATGTGATTATGAGTGGTGCCCAGAGGAAAGAGGAGCGCTAGGACATGGCAGACAA
TAAACAGATCTTGACCACAGAGCAGGAGAAGAAGCAGAAGCTGGAGATGGATGCTATGTTCAACCTGGAGCATGGCACCA
CAGACCAGAGCAAGTTGCAGAAGGCCATTCCCACCCTGTCCAACATCCAGGAAGCCCAGAGAGCCTGGAAGGATGACTTT
GCCCTTAACAGCATGCTAAGGAGGAAGTTTAGGAAAAAGGAAAAGGCCATAAAAGAAGAGGAGGGAAAAACACTGGCCCT
ACAGAACAAGGCAAACCTCAGGATCACCCTGGTTCCTGAAACAGAAGAGAACTGGAAGCTTGCTGCCCTGCTTAAGTACC
ACATCCTGGACTCATATGAAGAC

Alignment

ORF - retro_meug_1661 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.14 %
• Parental protein coverage: 67.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HGSLNRYHHSHPLRERAQKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRM
          H.SLNRY.HSHPL.ERA.KLSQ.ILV.RFEM...IWCDGCKNHIGMG..YNAE.KKVGNYYTTPIYRFRM
Retrocopy HDSLNRYYHSHPLWERAWKLSQAILVVRFEMLCSIWCDGCKNHIGMGICYNAE-KKVGNYYTTPIYRFRM

Parental  KCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQILTTEQEKKQKLETDAMFRLEHGTADQNKL
          KCHLCVN.IEMQ.DP..CDYVI.SGAQRKEER.DMADN.QILTTEQEKKQKLE.DAMF.LEHGT.DQ.KL
Retrocopy KCHLCVNCIEMQRDPVSCDYVIMSGAQRKEER*DMADNKQILTTEQEKKQKLEMDAMFNLEHGTTDQSKL

Parental  QKAIPTLSNIQEAQSAWKDDFALNSMLRRKFREKKKAIKEEEEKTLALQTKANLSIPLVPETEEDRKLAA
          QKAIPTLSNIQEAQ.AWKDDFALNSMLRRKFR.K.KAIKEEE.KTLALQ.KANL.I.LVPETEE..KLAA
Retrocopy QKAIPTLSNIQEAQRAWKDDFALNSMLRRKFRKKEKAIKEEEGKTLALQNKANLRITLVPETEENWKLAA

Parental  LLKYHSLDSYED
          LLKYH.LDSYED
Retrocopy LLKYHILDSYED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1661 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1661 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013695	1 retrocopy	retro_meug_1661 ,