RetrogeneDB ID: | retro_meug_1665 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold51878:13061..13616(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HSD17B8 | ||
| Ensembl ID: | ENSMEUG00000008660 | ||
| Aliases: | None | ||
| Description: | hydroxysteroid (17-beta) dehydrogenase 8 [Source:HGNC Symbol;Acc:3554] |
Retrocopy-Parental alignment summary:
>retro_meug_1665
ATGGTGGTCCAGCTTCAACCGCATTGAGCATTCGCTCTGGTCACAGGTGCAGGCAGTTGCCATCAGTTGGGCAGTCAGCC
TGCACCTGACCAGGGAAGGGGCTGCAAGTGACCAGGATGGGGCAGCTGCTGAGAAGATTGTACGACTTCTAGAGGGGATG
GGGAGTGAAGCTGGGGCTGGCTTAAGGTATTATGCTGCTTTCCAGGTTGATGTGACCAAAGCCAGGGCAATGCAGGGGCT
GATAGAGCAAATCCATGCCTGTTTCTCTCGTCTACCATCAATGGTGGTCTCTCATGCTAGGTTTACCCGAGATGAGTTTT
TGTTCTGAATACCTGAGGATTACTGGAATGAAGTCATTTCTGTCAATCTCAAGGGCACCTTTTTGGTCTCTCAGGCTACA
GTTAGACACCTGGTATCCAGTGACTATGGTGGCTCCATCATCAACATCAGCAGCATCATGTAAAGGTGGGGAACCTGGGA
CAGGCAAACTATGCAACATCCAGAGCTGGAGTGGAAGAAATAACCTGTAGTGTGTCCCAGGAACTTGGATGACAT
ORF - retro_meug_1665 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 65.79 % |
| Parental protein coverage: | 72.48 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | MAAQLRLRSALALVTGAGS-GIGRAVSLRLAREGALVAASDRDGAAAEKTIRLLEGTESKLGLAGRH-AA |
| M..QL....A.ALVTGAGS..I..AVSL.L.REG...AASD.DGAAAEK..RLLEG..S..G...R..AA | |
| Retrocopy | MVVQLQPH*AFALVTGAGS>AISWAVSLHLTREG---AASDQDGAAAEKIVRLLEGMGSEAGAGLRYYAA |
| Parental | FQADVAEAESVHGLIEQIQACFSRPPSVVVSCAGITQDEFLLRMPEDYWDEVIAVNLKGTFLVTQAAARA |
| FQ.DV..A....GLIEQI.ACFSR.PS.VVS.A..T.DEFL...PEDYW.EVI.VNLKGTFLV.QA..R. | |
| Retrocopy | FQVDVTKARAMQGLIEQIHACFSRLPSMVVSHARFTRDEFLF*IPEDYWNEVISVNLKGTFLVSQATVRH |
| Parental | LVSSGCGGSIINIGSIV-GKVGNLGQANYAASKAGVEGMTRSVARELGRH |
| LVSS..GGSIINI.SI...KVGNLGQANYA.S.AGVE..T.SV..ELG.H | |
| Retrocopy | LVSSDYGGSIINISSIM<VKVGNLGQANYATSRAGVEEITCSVSQELG*H |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1665 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1665 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000008565 | 1 retrocopy | |
| Macropus eugenii | ENSMEUG00000008660 | 1 retrocopy |
retro_meug_1665 ,
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