RetrogeneDB ID: | retro_meug_1667 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold519:2808..3537(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNOT8 | ||
Ensembl ID: | ENSMEUG00000007427 | ||
Aliases: | None | ||
Description: | CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207] |
Percent Identity: | 73.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD |
MPA........I.EVWA.NL.EEM.K.R.....Y.Y.AMDTEFPGVV..P.GEFRS..DYQYQLLRCNVD | |
Retrocopy | MPAPRADQCPRIREVWACNLDEEMKKMRPVIQQYNYVAMDTEFPGVVAKPVGEFRSYADYQYQLLRCNVD |
Parental | LLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFHKHEEEGIDTLHFAELL |
.LKIIQLGLTF.NE.GE.P.G..TWQFNFKFNL.EDMY.QDSI.LL..SG.QF.KHEEEGI....FAELL | |
Retrocopy | WLKIIQLGLTFMNEQGECPPGTSTWQFNFKFNLKEDMYAQDSIELLTMSGIQFKKHEEEGIEAQYFAELL |
Parental | MTSGVVLSDSVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQ |
MTSGVVL...VKWLSFHSGYDFGY..K.LT.S.LPEE.H.FF.IL.LFFP.IYD.KYLMKSC.NL.GGLQ | |
Retrocopy | MTSGVVLCEGVKWLSFHSGYDFGYFIKILTNSPLPEEAHDFFEILRLFFPVIYDIKYLMKSCRNLRGGLQ |
Parental | EVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKE |
EVA.QL.L.RIG.QHQAGSDSLLTGMAFF.M.E | |
Retrocopy | EVATQLELERIGSQHQAGSDSLLTGMAFFKMRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000014232 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007427 | 8 retrocopies |
retro_meug_1667 , retro_meug_1677, retro_meug_1931, retro_meug_2053, retro_meug_350, retro_meug_420, retro_meug_487, retro_meug_88,
|
Ochotona princeps | ENSOPRG00000013065 | 4 retrocopies |