RetrogeneDB ID: | retro_meug_1680 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold526223:183..839(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000010149 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ATP6V0D1 | ||
| Ensembl ID: | ENSMEUG00000014351 | ||
| Aliases: | None | ||
| Description: | ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1 [Source:HGNC Symbol;Acc:13724] |
Retrocopy-Parental alignment summary:
>retro_meug_1680
TACAGCTACATGATCGACAACGTCATCCTGCTGATCACAGGGACCTTGCATAATCGCAGCGTTGTGGAGCTTGTCCACAA
GTGCCACCCACTAGGTAGCTTTGAGCAGATGGAGGCCGTGAGCATTGCTCAGACACCAGAAGAATTATATAACGCTATCT
TAGTGGACACCCCACTCTATTCATTTTTCCAAGACTGCATCTCTAAGGAAGACCTCGAGCAGATGAACATCGAGATCATT
CGTAACACACTGTACAAAGCCTACCTAGAGGCTTTCTACAAGTTCTGCACCTCTCTGGGGGGCATTACAGCACTTAACAT
GTGTCCTATCCTGGAATTTGAGGCTGACCGCAGAGCCTTCATCATCACCCTCAACTCGTTTGGCACTGAGCTCTCCAAGG
AGGACCGGGCCAAGCTGTTTCCACACTGTGGGAAGCTCTACCCTGAGGGTTTGGCTCTGCTGGCCCAGGCAGAGGACTAC
AAGGAGGTCAAAACTGTGGCTGACTACCATCTGCAATATAAACGTCTCTTTGAAAGGGCTGGTAGCAATCCCGGCGATAA
GACCTTGGAGGACCGATTCTTTGAGTACGAGGTGAAACTGAACAGATGACCTTTCTCAACCACTTCCACTTTGGTGTCTT
CTATGCCTTCGTGAAG
ORF - retro_meug_1680 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.64 % |
| Parental protein coverage: | 62.39 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | YSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYSAILVDTPLAAFFQDCISEQ |
| YSYMIDNVILLITGTLH.RS..ELV.KCHPLGSFEQMEAV.IAQTP.ELY.AILVDTPL..FFQDCIS.. | |
| Retrocopy | YSYMIDNVILLITGTLHNRSVVELVHKCHPLGSFEQMEAVSIAQTPEELYNAILVDTPLYSFFQDCISKE |
| Parental | DLDEMNIEIIRNTLYKAYLESFYKFCALLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLF |
| DL..MNIEIIRNTLYKAYLE.FYKFC..LGG.TA..MCPILEFEADRRAFIIT.NSFGTELSKEDRAKLF | |
| Retrocopy | DLEQMNIEIIRNTLYKAYLEAFYKFCTSLGGITALNMCPILEFEADRRAFIITLNSFGTELSKEDRAKLF |
| Parental | PHCGKLYPEGLAQLARADDYEQVKTVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNK-LAFLNQF |
| PHCGKLYPEGLA.LA.A.DY..VKTVADY...YK.LFE.AGSNPGDKTLEDRFFE.EVKLN....FLN.F | |
| Retrocopy | PHCGKLYPEGLALLAQAEDYKEVKTVADYHLQYKRLFERAGSNPGDKTLEDRFFEYEVKLNR<MTFLNHF |
| Parental | HFGVFYAFVK |
| HFGVFYAFVK | |
| Retrocopy | HFGVFYAFVK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1680 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1680 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000014351 | 1 retrocopy |
retro_meug_1680 ,
|
| Monodelphis domestica | ENSMODG00000005918 | 2 retrocopies | |
| Sarcophilus harrisii | ENSSHAG00000013154 | 1 retrocopy |