RetrogeneDB ID: retro_meug_1693

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold53330:370..984(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000013582
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000004742
• Aliases: None
• Description: None

Sequence

>retro_meug_1693
CCGGTGGCCCTCTCCTACAAGTTGCTGGACTCCGCGGACAGCCGCCTGGCCCTGGTCTTCCTGCATGGCTTGTTCGACAG
CAAAACCAACTTCCAGACCATCGGCAAGAGCCTCCAGCAGCAGACGGGCCAGAGGGTGCTGATAGTGGATGCTCAGAACC
ATGGAGAGAGTCCTCACAGCCCTGACTGCAGCTACGAGGCCATGAGAGCAGCTGTGGAGGCCATTCTGCCCCACCTTGGC
CTGGCTCCCTGCGTCCTCATAGGACACAGCATGGAAGGCAAGACAGCCATGATACTGGCATTACAGAAGCTAGAGCTGAT
GGAGTATCTCATCTCAGTGGACATCAGCCCATTGCCTACCACAGCCATCTTAGACTTCCCTTCCTATTTGGAAGCCATGA
AGGCTGTACAGATCCCCGAGGAGCTGTCCCTCTCTCAGCCTCGCAAAGTAGACGACCAGCAGCTTAGTCCTGTCATCCAG
GATTCTATGGTACAGCAGTTCCTCCTCACCAATCTGGTGAAAGCAAGCACTGGGCAGTTCGAGTGGAGGGGTCAACATTG
AAGGCCCTGATCCAGCAGATGGACAAGATCCTGGACTTCCCCCAGCTCCAGAAA

Alignment

ORF - retro_meug_1693 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.18 %
• Parental protein coverage: 76.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PVPLSYRLLDGQDTLPPVVFLHGMFSNKNIFQAEAETLAQKTGRKVLIVDARNHGESPHSPDSSYEAMSA
          PV.LSY.LLD..D.....VFLHG.F..K..FQ.....L.Q.TG..VLIVDA.NHGESPHSPD.SYEAM.A
Retrocopy PVALSYKLLDSADSRLALVFLHGLFDSKTNFQTIGKSLQQQTGQRVLIVDAQNHGESPHSPDCSYEAMRA

Parental  DMEALLPQLGLAPCVLIGHSMGGKTAMTLALQKPELVERLISVDISPLPNTVVLDFPSYLEAMKAVQIPE
          ..EA.LP.LGLAPCVLIGHSM.GKTAM.LALQK.EL.E.LISVDISPLP.T..LDFPSYLEAMKAVQIPE
Retrocopy AVEAILPHLGLAPCVLIGHSMEGKTAMILALQKLELMEYLISVDISPLPTTAILDFPSYLEAMKAVQIPE

Parental  ELSLSQARKIADQQLSPVIQDSTIRQFLLTNLVEASTGQFEWR-VNIE-ALIQQMDKILDFPQLQK
          ELSLSQ.RK..DQQLSPVIQDS...QFLLTNLV.ASTGQFEWR.VNIE.ALIQQMDKILDFPQLQK
Retrocopy ELSLSQPRKVDDQQLSPVIQDSMVQQFLLTNLVKASTGQFEWR>VNIE>ALIQQMDKILDFPQLQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1693 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1693 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000004742	3 retrocopies	retro_meug_1154, retro_meug_1693 , retro_meug_764,