RetrogeneDB ID: retro_meug_1719

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold54763:7878..8148(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IDI2
• Ensembl ID: ENSMEUG00000015260
• Aliases: None
• Description: isopentenyl-diphosphate delta isomerase 2 [Source:HGNC Symbol;Acc:23487]

Sequence

>retro_meug_1719
ATTCTTATTAATGAAAATGATAACAAGATTGGTACAAAGACTGAAAAGAACTGCTGCCTGAATAAAAACATTGATAAAGG
ATTATTACACAAAGCTTTTACTGTCTTCTTATTTAATACAGAAAATATGTTATTACTGCAACAAAGATTAGATGCTAAAA
TTACTTTTCAAAATTGTTTTGCAAACACTTATTGTAGTCATCCACTAAGCAACCCAACAGAACTGGAAGAAAATAACACC
ATGGAATTAAGATGGGTAGCTCAGAAACAA

Alignment

ORF - retro_meug_1719 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.22 %
• Parental protein coverage: 73.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IVVDENDWVIDTESKLNCHLNKNIEKXXXHRAFSVVLFNSKNQLLVQERADNKITFPVYFTDSCSSHPLS
          I...END..I.T....NC.LNKNI.K...H.AF.V.LFN..N.LL.Q.R.D.KITF...F.....SHPLS
Retrocopy ILINENDNKIGTKTEKNCCLNKNIDKGLLHKAFTVFLFNTENMLLLQQRLDAKITFQNCFANTYCSHPLS

Parental  NTLELDENNAVGVRRAAQRQ
          N..EL.ENN....R..AQ.Q
Retrocopy NPTELEENNTMELRWVAQKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1719 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1719 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008984	5 retrocopies	retro_chof_1078, retro_chof_1667, retro_chof_1771, retro_chof_1881, retro_chof_1921,
Macropus eugenii	ENSMEUG00000015260	1 retrocopy	retro_meug_1719 ,
Tupaia belangeri	ENSTBEG00000009538	1 retrocopy	retro_tbel_2763,