RetrogeneDB ID: | retro_meug_1809 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold60608:5980..6335(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DTD1 | ||
Ensembl ID: | ENSMEUG00000009170 | ||
Aliases: | None | ||
Description: | D-tyrosyl-tRNA deacylase 1 [Source:HGNC Symbol;Acc:16219] |
Percent Identity: | 66.94 % |
Parental protein coverage: | 57.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NKPDYHMAMPTEQAETFYNNFLAQLRKAYKPELIKDGKFGAYMQVHIQNDGPVTIELESPVAAAADPKQL |
NK.DY.MAMP.EQA.TF...FL.QLRK.YKPELIKDGKFG..MQ.HIQ.DGPVTI..ESPV.A.AD.K.. | |
Retrocopy | NKLDYLMAMPMEQAQTFCKTFLVQLRKTYKPELIKDGKFGGHMQAHIQKDGPVTIQVESPVTASADAKKF |
Parental | SKLEKQQQRKEKTRAKGPSESSKERNVSR-KDDPSASSG-AEGDVSSEREP |
SKLEK..QRKEK...KGPSESSKER..S.....P....G.AEG..SSER.P | |
Retrocopy | SKLEKKPQRKEKMSVKGPSESSKERTASQ<RMTPVLATG<AEGNASSERQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008964 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009170 | 2 retrocopies |
retro_meug_137, retro_meug_1809 ,
|
Macaca mulatta | ENSMMUG00000012880 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005696 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027430 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010988 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000242 | 1 retrocopy |