RetrogeneDB ID: | retro_meug_1848 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold65261:1914..3341(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMEUG00000011308 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ALDH1A3 | ||
| Ensembl ID: | ENSMEUG00000002553 | ||
| Aliases: | None | ||
| Description: | aldehyde dehydrogenase 1 family, member A3 [Source:HGNC Symbol;Acc:409] |
Retrocopy-Parental alignment summary:
>retro_meug_1848
CCCTACTCCTCGGCTGCCCCTCTTCCAAGCCCTGTGCTACAGCCAGATGTCCGATATGATAAACTCTTCATCAATAATGA
GTGGAAGGATGCAGTCAGCAAGAAGACATTCCCAACAGTCAATCCTTCAACAGGAGAGGTCATCACTCACGTGGCTGAAG
GTGATAAGGCCGATGTAGACTTGGCTGTGAAAGCTGCCCGGGAGGCCTTTAGGCTGGGGTCACCATGGCGACAGATGGAT
GCTTCTGAGAGGGGCCATTTACTTTACCGCCTAGCTGATCTGGTAGAGAGAGATCGCACCTACCTGGCCTCATTAGAGAC
TTTGGACAACGGCAAGCCTTTCCAAGAATCATATGTCCTAGACCTTGATGAAGTCATTAAGGTATATCGGTACTTTGCGG
GCTGGGCAGACAAATGCCATGGAAAGACTATCCCTATGGATGGAGAACACTTCTGCTACACAAGGCATGAGCCTATTGGG
GTATGTGGCCAGATTATCCCATGGAACTTCCCCTTGGTCATGCAGGGCTGGAAACTTGCACCAGCCCTTGCCACTGGCAA
TACCATTGTCATGAAGGTAGCTGAACAGACCCCACTCTCTGCCTTGTACCTTGCCTCCTTGATCAAAGAAGCTGGCTTCC
CTCCTGGTGTCGTAAATATCATCACAGGCTATGGGCCCTCCGCTGGGGCTGCTGTGGCCCAACACATGGACATTGATAAA
GTGCCTTTACTGGTTCTACAGAGGTTGGACACCTGATCCAGAAGGCAGCAGCAGACTCGAACCTGAAGAGGGTCACCCTG
GAGCTGGGTGGGAAAAGCCCCAGTATCGTCCTGGCTGACGCAGACATGAATCATGCTGTGGAGCTGTGTCATGAAGCACT
GTTCTTCAACATGGGCCAGTGCTGTTGTGCGGGTTCTCGGACCTTTGTGGAAGACTCCATCTATGATGAATTTCTTGAAA
GGACTGTAGAAAAAGCCAAGCAGAGGAAAGTTGGGAATCCCTTTGAGCTTGACACACAGCAAGGGCCCCAGGTAGACAAG
GAACAGTTTGAAAAAATCCTGAGTTACATCCAAATAGGCCAGAAAGAAGGCGCTAAGTTGATGTGTGGGGGAGAACGCTT
TGGAGAGAAGGGCTTCTTCATCAAGCCCACTGTCTTTGGCAATGTACAAGACAACATGAGAATTGCCAAGGAGGAGATCT
TTGGGCCTGTACAGCCTGTGTTCAGATTCAAAAAGATCAGTGAGGTTATCGAGAGAGCCAATGATACCAAGTATGGGTTA
GCAGCAGCGGTCTTTACCAGGGACCTGGACAAGGCTATGTATGTGACCCAAGCCCTGCAAGCTGGAATGGTTTGGGTCAA
TACCTATAATATCGTAACATGCCACACTCCTTTTGGAGGCTTTAAGGAATCTGGAAATGGAAGAGAA
ORF - retro_meug_1848 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.31 % |
| Parental protein coverage: | 97.54 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | PDKKMPPLPHPIRNLEVKHTKIFINNEWHESKSGKKFPTYNPSTVEKICEVEEGDK-DIDKAVEAAKAAF |
| P.....PLP.P.....V...K.FINNEW....S.K.FPT.NPST.E.I..V.EGDK.D.D.AV.AA..AF | |
| Retrocopy | PYSSAAPLPSPVLQPDVRYDKLFINNEWKDAVSKKTFPTVNPSTGEVITHVAEGDKADVDLAVKAAREAF |
| Parental | QRGSLWRQMDALSRGRLLHKLADLMERDRIILATLETMDTGKPFLHAFFIDLEGCIKTLRYYAGWADKIH |
| ..GS.WRQMDA..RG.LL..LADL.ERDR..LA.LET.D.GKPF......DL...IK..RY.AGWADK.H | |
| Retrocopy | RLGSPWRQMDASERGHLLYRLADLVERDRTYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKCH |
| Parental | GRTIPADENVVCFTRHEPIGVCGAIIPWNFPLMLLIWKMAPALCCGNTIVIKPAEQTPLTSLYLGSLIKE |
| G.TIP.D....C.TRHEPIGVCG.IIPWNFPL....WK.APAL..GNTIV.K.AEQTPL..LYL.SLIKE | |
| Retrocopy | GKTIPMDGEHFCYTRHEPIGVCGQIIPWNFPLVMQGWKLAPALATGNTIVMKVAEQTPLSALYLASLIKE |
| Parental | VGFPPGVVNIVPGYGPTAGAAISSHPKIDKI-AFTGSTEVGKLIKEAASKSNLKRVTLELGGKNPCIVCA |
| .GFPPGVVNI..GYGP.AGAA...H..IDK..AFTGSTEVG.LI..AA..SNLKRVTLELGGK.P.IV.A | |
| Retrocopy | AGFPPGVVNIITGYGPSAGAAVAQHMDIDKV<AFTGSTEVGHLIQKAAADSNLKRVTLELGGKSPSIVLA |
| Parental | DADLDLAVECAHRGVFFNQGQCCTAASRVFVEEQIYPEFVKRSVEYAKKRLVGDPFDVKTEQGPQIDQKQ |
| DAD...AVE..H...FFN.GQCC.A.SR.FVE..IY.EF..R.VE.AK.R.VG.PF...T.QGPQ.D..Q | |
| Retrocopy | DADMNHAVELCHEALFFNMGQCCCAGSRTFVEDSIYDEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQ |
| Parental | FDKILDLIESGKKEGAKLEYGGSAMEDRGLFIKPTVFSEVTDNMRIAKEEIFGPVQPIMKFKNIEEVIKR |
| F.KIL..I..G.KEGAKL..GG......G.FIKPTVF..V.DNMRIAKEEIFGPVQP...FK.I.EVI.R | |
| Retrocopy | FEKILSYIQIGQKEGAKLMCGGERFGEKGFFIKPTVFGNVQDNMRIAKEEIFGPVQPVFRFKKISEVIER |
| Parental | ANSIEYGLTAAVFTKNLDKALKLASALESGTVWINCYNAIYAQAPFGGFKMSGNGRE |
| AN...YGL.AAVFT..LDKA.....AL..G.VW.N.YN......PFGGFK.SGNGRE | |
| Retrocopy | ANDTKYGLAAAVFTRDLDKAMYVTQALQAGMVWVNTYNIVTCHTPFGGFKESGNGRE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1848 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1848 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 4 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000002553 | 3 retrocopies |
retro_meug_1574, retro_meug_1848 , retro_meug_802,
|
| Macropus eugenii | ENSMEUG00000008847 | 1 retrocopy |