RetrogeneDB ID: | retro_meug_1879 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold68133:7..867(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | LAS1L | ||
| Ensembl ID: | ENSMEUG00000012762 | ||
| Aliases: | None | ||
| Description: | LAS1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:25726] |
Retrocopy-Parental alignment summary:
>retro_meug_1879
AAATCCGGGAAAGTGCTAGTCTCCTATGAAGAAGAGCAATTTAGGGTGCTTAGAGAACTAAGGCAGCTGCTAAGGCCCTC
AAGACTTGGGCAAACTCTTCCACTGAGGTGGAATGGATGGTGTCAAAAATGAAGAAGTTGACACAGGACAATGGGACCCT
TGTGGTAAGCATCTTGCTAAGTGATGGTTTCCTCATTCCTACTGCAGAGCAGCTGGAAGCTTTGCAGATTCAACCAGCAA
GAACCATGAATCTGAGCAACCTTGTGTTGCCCCGGTGCTTTTCCCACTTCTGGCAGCCGCTTTTGAAGGGCTTAGAATCC
CAGCCATTCACCCAGGCTCTCCTGGAAAAGATGCTCTCAGTGCTTCCAGAATTTGGAGACACAGGGATCCGACCAGCCTA
CCTCATCAGTTGGATCAGTGAACTGCTAGTGGTCTATGGCCCCCATGGGGAACACTTCACTTCTAGCCAGCGTGCCATCC
GGAAAACATGGAAGATTGTATGCCACAACTTCTCCTTGGATTGGTCCCAGCTGCTTGATGTCTGTCTGGATTGTGCCTGC
TGGGCCACTCCCCCCATCCTCCAACTCTTGCTCAAGACCATGGAACCACCCTTCCCCCTAGACACCCAAGAGAAGCTTAT
GTGTCTCTGTACCATCTACACCCAGGGTGGGAACCCAAACTCCAGACCCAGGTCCAGGGAAGGGTCTGTGCCTTTGAGGA
GGCCCATTTACACTCTGGAAGACCTGCAGTGGCAGGTGAAGCAGTCTATGTTGATGGATCGGCAGAGGAGTTACAAACCA
GGGGATGAGGAGGACACAGAGACTGAGATGGAAGATCTTTCTTCCAAGACAGAGAAAGAG
ORF - retro_meug_1879 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 60.14 % |
| Parental protein coverage: | 50.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KIRKLLVSYGEQQFKVLRRSRQL-PKAVKLWTKSTREVERVVGRLKKLSKENRNYVVDTLLDEGFLIPTI |
| K..K.LVSY.E.QF.VLR..RQL..KA.K.W..S..EVE..V...KKL...N...VV..LL..GFLIPT. | |
| Retrocopy | KSGKVLVSYEEEQFRVLRELRQL<AKALKTWANSSTEVEWMVSKMKKLTQDNGTLVVSILLSDGFLIPTA |
| Parental | EQLEALKIQPTEVLNLVSLLMPRSFSHFWQPLLKGLQTHPFIQDLLEKMLRTLPDCGDTGIRPAYLISWI |
| EQLEAL.IQP....NL..L..PR.FSHFWQPLLKGL...PF.Q.LLEKML..LP..GDTGIRPAYLISWI | |
| Retrocopy | EQLEALQIQPARTMNLSNLVLPRCFSHFWQPLLKGLESQPFTQALLEKMLSVLPEFGDTGIRPAYLISWI |
| Parental | NELVVVYTPAGPCQKRLTSSQRSVRKSWKMGPRKFSLNWSQLLDVCLDATCWASPHLLQLILKAMEPQLP |
| .EL.VVY.P.G......TSSQR..RK.WK.....FSL.WSQLLDVCLD..CWA.P..LQL.LK.MEP..P | |
| Retrocopy | SELLVVYGPHG---EHFTSSQRAIRKTWKIVCHNFSLDWSQLLDVCLDCACWATPPILQLLLKTMEPPFP |
| Parental | LDSQEKLMCLCTIYTQG--ESCLVKSWDGTTTLRRPIYTLESLQWQVKRS--HDEKRKSPQEEEEEEEEE |
| LD.QEKLMCLCTIYTQG........S..G...LRRPIYTLE.LQWQVK.S...D..R......EE..E.E | |
| Retrocopy | LDTQEKLMCLCTIYTQGGNPNSRPRSREGSVPLRRPIYTLEDLQWQVKQSMLMDRQRSYKPGDEEDTETE |
| Parental | EEEEEEETESE |
| .E.....TE.E | |
| Retrocopy | MEDLSSKTEKE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1879 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1879 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000012762 | 1 retrocopy |
retro_meug_1879 ,
|
| Sarcophilus harrisii | ENSSHAG00000005698 | 1 retrocopy |