RetrogeneDB ID: retro_meug_1957

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold74468:6548..7273(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EPHX3
• Ensembl ID: ENSMEUG00000009666
• Aliases: None
• Description: epoxide hydrolase 3 [Source:HGNC Symbol;Acc:23760]

Sequence

>retro_meug_1957
CTGATTGGGTTCTTCATGTGGATGCTGGTGTACTGGGGCACATGCTTGCTACCCTTATGTATTTAGTGAAGGCCCTGGGC
CACGTGCTGTGGCACCTGGAGTAAGGCTACTACAGCCAGTCCCAATGTAAGGTGCCATCGTGCCTTCAAGACCCCTGCTT
TGGACAGCACCATTTCCTTCACCTCAAGACCTCTGGCCTGCATCTGTATTTTATCTCCAGGGGCCAAGGGTCACTGATGC
TGCTCCACCATGGCTTCTCTCAGATCTAGTTGTCCTAGAGGCACCAGCTTATGGAGTTCTATCATGATTTCCATGTGGTA
GCACTGGACTTGAGGGGCTAAGGGAGATCAGATTCACCTACCAACCTGAACAGCTACACCATTGATGCCCTGACAACAGA
AATCAAAGATGCTATTGAGGCCCTAGATTATTACTCCAAATGTATCCTGGTGGCCCATGACTGGGATGGAAACTTGGCCT
GGATTTTCTCCATCTACTAATCAAGTTTGGTAGAGTAGCTGATAGTGATGAGTGCTGCCCCTATGTTTGTTTACAAAGAG
TATACCATGTACCATCCCAGCCAACTCTTTCACTCTAGTTATGTATTCCTGTTTCAGCTACCCTGGTTGCTTGAGAAGCT
ACTTTTTGTCTCTGATTTTCAGATCCTAAAGGATACCATGACCCATCCTATAACCAAAATCCGTGGCCTTACAGATGATG
CACTA

Alignment

ORF - retro_meug_1957 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.37 %
• Parental protein coverage: 71.94 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LVRFFMWTLVYWGACL-TALAYLGKALGHVLLHPGRGCCGRPRRQAPSCLQDPCFGQHHFLHLKTSGLRL
          L..FFMW.LVYWG.CL...L.YL.KALGHVL.H...G.........PSCLQDPCFGQHHFLHLKTSGL.L
Retrocopy LIGFFMWMLVYWGTCL<ATLMYLVKALGHVLWHLE*GYYSQSQCKVPSCLQDPCFGQHHFLHLKTSGLHL

Parental  HCVSKGQGPLMLLLHGFPEIWFSWRHQLMEFCHDFHVVALDLRGYGSSDAPTHVNCYTIDALTTDIKDAI
          ...S.GQG.LMLL.HGF..I..S.RHQLMEF.HDFHVVALDLRG.G.SD.PT..N.YTIDALTT.IKDAI
Retrocopy YFISRGQGSLMLLHHGFSQI*LS*RHQLMEFYHDFHVVALDLRG*GRSDSPTNLNSYTIDALTTEIKDAI

Parental  EALG-YSKCVLVAHDWGGILAWNFSVYYPSLVERMVVVSAPPMFVYQEYALHHPSQLFRSSYVFLFQLSW
          EAL..YSKC.LVAHDW.G.LAW.FS.Y..SLVE...V.SA.PMFVY.EY...HPSQLF.SSYVFLFQL.W
Retrocopy EALDYYSKCILVAHDWDGNLAWIFSIY*SSLVE*LIVMSAAPMFVYKEYTMYHPSQLFHSSYVFLFQLPW

Parental  LPEKLLSASDFQILKSTFTHPMTGIHGLTNDEL
          L.EKLL..SDFQILK.T.THP.T.I.GLT.D.L
Retrocopy LLEKLLFVSDFQILKDTMTHPITKIRGLTDDAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1957 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1957 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009666	1 retrocopy	retro_meug_1957 ,