>retro_meug_1976
GAGTGCATAGTGGAGTATTCCATGGAGTACAGTTTTTTACAATTGTCTCAGAGCACTCAGCAGTGCCTTAGCATCCCAGT
TTCGGTGGTGACACTGGACCCTATGAGGGATCAGTGCTTTGGAGACCAGTTTAGCCATTTGGTCCTGGATAAATTCCTGG
GTTATGATGATGTTTTGATGTCCAGCTTGAAAACCCTGACAGAAAATGAAGAGAACGAGGGTTTCCTGCACTGTGTTGTG
TCTGTGAAGCATTATCGCTTTGTCAGCATGTGGATGGTGAGGACTTTCTATCTGGCTGCCTTTGTCATTATGGTCATATT
TACTCTGTCACTCTCAGTGGTCCTGAGATATTCGCACCAGCAGATTTTGGTCTTTATTGTGGACCTCCTACAGAGGTTGG
AGATGAACATGACCATGGCTTTCCCTGCTGCACCCTTGCTCACAGTGATTTTGGCTCTTGTTGGTATGGAAGCCATCGTG
TCTGGATTCTTCAGCACCACCACAACAGCTTTCTATATCGTCCTCATCATGTGACTGGCTGACCAGTATGATGCCATCTG
TTACCACACCAACACCAGTAAGAGGCATTGGCTGAGGTTCTTCTACTTGTACCACTTTGCCTTTTTGCCTATCACTATCA
ATTCCATGGCTGTACAACAGTTTGGCCCTGGTCACTTCTTGGCTCATCATCCAGCATTCTATGATCTACTTTTTTCATTA
TTTTGAGTTGCCAGTCATCCTCCAGCAGATCTGCATCCGGGAGATGTTGCTGCAGAACCAGCAGATTGGCCAGGGCACCC
AAACAGCCCTACAGGATAATCTCAACAATAATACTACAGCCACAGCTGTGACCCCTGGGAGCCCCATTCCCTCTCTACAG
GAAGGGAGAAGCAGCCAGCCAGTCCCTGGGTAGGGACCTGGCCCCACTTCTGCCTCTGTAGGAGATGAACTGAACTAAAT
AGATGAGACAGCCACT
ORF - retro_meug_1976 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.66 % |
Parental protein coverage: |
62.43 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | EYIVEYSLEYGFLRLSQSTRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLDEFLGYDDVLMSSVKALAENE |
| E.IVEYS.EY.FL.LSQST.Q.LSIPV.VVTLDP.RDQCFGD.FS.L.LD.FLGYDDVLMSS.K.L.ENE |
Retrocopy | ECIVEYSMEYSFLQLSQSTQQCLSIPVSVVTLDPMRDQCFGDQFSHLVLDKFLGYDDVLMSSLKTLTENE |
|
Parental | ENKGFLRNVVSGEHYRFVSMWMARTSYLAAFVIMVIFTLSVSMLLRYSHHQIFVFIVDLLQMLEMNMTIA |
| EN.GFL..VVS..HYRFVSMWM.RT.YLAAFVIMVIFTLS.S..LRYSH.QI.VFIVDLLQ.LEMNMT.A |
Retrocopy | ENEGFLHCVVSVKHYRFVSMWMVRTFYLAAFVIMVIFTLSLSVVLRYSHQQILVFIVDLLQRLEMNMTMA |
|
Parental | FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYIILIVWLADQYDAICCHTNTSKRHWLRFFYLYHFAF-Y |
| FPAAPLLTVILALVGMEAI.S.FF..TTTAFYI.LI..LADQYDAIC.HTNTSKRHWLRFFYLYHFAF.. |
Retrocopy | FPAAPLLTVILALVGMEAIVSGFFSTTTTAFYIVLIM*LADQYDAICYHTNTSKRHWLRFFYLYHFAF<F |
|
Parental | AYHYRFNG-QYSSLALVTSWLFIQHSMIYFFHHFELPAILQQIRIQEMLLQNQQIGQGTQTALQDNLNNN |
| AYHY.F.G..Y.SLALVTSWL.IQHSMIYFFH.FELP.ILQQI.I.EMLLQNQQIGQGTQTALQDNLNNN |
Retrocopy | AYHYQFHG<LYNSLALVTSWLIIQHSMIYFFHYFELPVILQQICIREMLLQNQQIGQGTQTALQDNLNNN |
|
Parental | TAAAAVAP-APGPLYRMATVASP-PGEGPGPTSASVGGELNWMAETAT |
| T.A.AV.P..P.P.........P.PG.GPGPTSASVG.ELN...ETAT |
Retrocopy | TTATAVTPGSPIPSLQEGRSSQPVPG*GPGPTSASVGDELN*IDETAT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1976 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1976 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.