RetrogeneDB ID: | retro_meug_1983 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold76482:11242..11712(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | YIF1B | ||
| Ensembl ID: | ENSMEUG00000001964 | ||
| Aliases: | None | ||
| Description: | Yip1 interacting factor homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:30511] |
Retrocopy-Parental alignment summary:
>retro_meug_1983
TTGATTGCCCATGGCAAGAAGCTGGTGGACAGGCATATTGACCACTTCATTCCTGTCACCAAGATGAAGTATTACCTTGC
AGTAGATACCATGTATGTAGGGAAGAAAGTGGGACTCTTGGTGTTTCCGTACCTACACCAGGATTGGGAGGTACAGTAGC
AGTATGACATGCCAGTGGCCCTGAGGTTTGCAATCAATGTCCCAGATCTCTACATTCCAGTCATGGTCTTCATCACATAC
ATCCTGGTGGCTGAGCTGGTGCTGGGGCCACTGGACAGGTATCCCTAGACCTCCTGGGTCTACAGGCCAGCTCAGACCTG
GTCCAGCTCACAGTGGAGATGCTGGCCATCCTGCTCAGCCTCTACCTGGTCACGACCAACACAGACCTCACCACCATTGA
CCTGCTGGCCTTCTTGGGGTATAAGTGTGTAGGGATGATTGACAGGATAATAACCAGCCTACTTTCTGGT
ORF - retro_meug_1983 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.58 % |
| Parental protein coverage: | 53.95 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | LAAHGKELVDRNIDRFIPVTKLKYYFAVDTVYVGKKLGLLVFPYLHQDWEVQYQQDMPVAPRFDINAPDL |
| L.AHGK.LVDR.ID.FIPVTK.KYY.AVDT.YVGKK.GLLVFPYLHQDWEVQ.Q.DMPVA.RF.IN.PDL | |
| Retrocopy | LIAHGKKLVDRHIDHFIPVTKMKYYLAVDTMYVGKKVGLLVFPYLHQDWEVQ*QYDMPVALRFAINVPDL |
| Parental | YIPAMAFITYILVAGLALGTQDRF-SPDLVGLQAASALAWLTVEVLAILLSLYLVTVNTDLTTIDLLAFS |
| YIP.M.FITYILVA.L.LG..DR..S.DL.GLQA.S.L..LTVE.LAILLSLYLVT.NTDLTTIDLLAF. | |
| Retrocopy | YIPVMVFITYILVAELVLGPLDRY<SLDLLGLQASSDLVQLTVEMLAILLSLYLVTTNTDLTTIDLLAFL |
| Parental | GYKYVGMIGGVVTGLLFG |
| GYK.VGMI....T.LL.G | |
| Retrocopy | GYKCVGMIDRIITSLLSG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1983 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1983 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000001964 | 1 retrocopy |
retro_meug_1983 ,
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