>retro_meug_2005
TCTGAAATTGAGAGTTACCTGGAGAAGGAGTATTAGATGCTTCTTCAAGAGGATTGGATATCTAAGTGCAAGGAGATAAC
GGAGTCTTACCTACCAGTTATCATCAATGCAATCAGAGGGGAAATGAGCAATCCTGAGGAGGTGTGCTGAGCTCTCATGT
TTTGCTGGTCCCTTCAGAAACATCTGACTACTCCAAGTCAACAACAGAAGGAACTGGAATCCAACTCCATCCCTGAAGTG
GACATGTCCAAAGTGGTGGCTCCCTTTATGGCCAATGTTCCCCTGCTCCTTTGTCCTCAGGGAGAGACCCAGAAAAATCC
AGCTCAGCCAAAGGTCAGAGAGGATGTGTGCCAAGACTGTGTCCAGTTAGTGACAGATGCTCAGAATGCTATAAAGACCA
ACTCCAGCTTCATCGAATCCTTGGTGAATCATCTCAAGGAAGAGTGTGATTGCCTTGGGCCTGGTGTATCAGACATGTGC
AAGACCTAGATCAGTCAATATTCTGATATTACTGTCCAATTGATGAGGCACATGTCCAAGGAGATCTGTGGGTATGCTCG
GTTCTGTGCAGAGAAGGAGATGCCTCTGTACTCCCTGGTCCCAGCTCGTGCAGCTGCCACCAAAGTGCTCCCTGCGCTGA
AGTTGGTGGAGCCAGTCAAGAAGAATGTGGTTCAGACAAAGGCTGAAGCACTTTCGAGCTGTGCCAGTATGTTATCAAAG
AGATCATCAAATTGCTGGAGGGCAACAAGACTAAGGAGGATAGGATTCATGCAGTTGAAAAAGTGTGCTCCGTGATCTTC
AAGTCCATGACTGAGGAATGCTGAGACCTGGTGGAGTCTTGTGGTCCAATCGTTGTGGATCTGCTTCTTGACGAGACAAG
GCTACACTTGGTTTGCATCTTACTTAACCTTTGTCAAAGCAAAAAGTCAGTTAACATGGCCAGGCTTAAGAGTGGTGTCT
TCAGTGAGATGTGTGAAAATGTCGATGAGTATTTGGACTGGAACCTGGATAAGAACAGCACGAAGGCCATGATCCTCTCT
GCCTTTAAGAAGGCTTGTAGCATGTTGCCAGGAATTTACAAGGATGAGTGTGATGAGTTTGTGGAACAGTATGAGCCTAT
CCTGATAGCAGCCCTGAATGATGAGATGAATCCTGATTCTCTGTATCTGAAAATCAGAGCTTGTCCCAAAGCTTCTCCTA
AGTCTCTATTGGGAACTGGTGTTCAAGCTGCTGGTGTAAGAACATGGAGACAGTCGCTCAGTGCAACACTGTTGAGCATT
GCAAGTGCCACATGT
ORF - retro_meug_2005 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.35 % |
Parental protein coverage: |
85.71 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | AEIESFLERECEMLPQEDWVSKCKEIIESYLPVIINAIEGEMSDPEEVCGALMFCRSLQKHLATLSLHQK |
| .EIES.LE.E..ML.QEDW.SKCKEI.ESYLPVIINAI.GEMS.PEEVC.ALMFC.SLQKHL.T.S..QK |
Retrocopy | SEIESYLEKEY*MLLQEDWISKCKEITESYLPVIINAIRGEMSNPEEVC*ALMFCWSLQKHLTTPSQQQK |
|
Parental | ELESNSIPEGDMSEVVAPFMANVPLLLYPQGETQKKPPPPKAGEDVCQDCVKLVTDVQNAVKTNSSFVVS |
| ELESNSIPE.DMS.VVAPFMANVPLLL.PQGETQK.P..PK..EDVCQDCV.LVTD.QNA.KTNSSF..S |
Retrocopy | ELESNSIPEVDMSKVVAPFMANVPLLLCPQGETQKNPAQPKVREDVCQDCVQLVTDAQNAIKTNSSFIES |
|
Parental | LVDHLREECDRLGPGVSDMCKAYISQYSDIAVQVMMHMQPKDICEYAGFCAGKKMPLQALVPAHVAATKV |
| LV.HL.EECD.LGPGVSDMCK..ISQYSDI.VQ.M.HM..K.IC.YA.FCA.K.MPL..LVPA..AATKV |
Retrocopy | LVNHLKEECDCLGPGVSDMCKT*ISQYSDITVQLMRHMS-KEICGYARFCAEKEMPLYSLVPARAAATKV |
|
Parental | IPALELVEPVKQNLVQIKAGP-TCELCQYIIKEIIKLLEGKKTKEDVVKAAEEVCSVIPSYLVGSCQDLV |
| .PAL.LVEPVK.N.VQ.KA...T.ELCQY.IKEIIKLLEG.KTKED...A.E.VCSVI.......C.DLV |
Retrocopy | LPALKLVEPVKKNVVQTKAEA<TFELCQYVIKEIIKLLEGNKTKEDRIHAVEKVCSVIFKSMTEEC*DLV |
|
Parental | DTFGVSIMHFLLKEIDPDSICSTLNICQNK-SINVARLKSGIFCEMCKKFDGYLDQNLDKNSMKAMILAA |
| ...G......LL.E......C..LN.CQ.K.S.N.ARLKSG.F.EMC...D.YLD.NLDKNS.KAMIL.A |
Retrocopy | ESCGPIVVDLLLDETRLHLVCILLNLCQSKKSVNMARLKSGVFSEMCENVDEYLDWNLDKNSTKAMILSA |
|
Parental | FEKACSMLPEIYKDECDEFVEQYEPVLIAALHDEMNPDSLCLKIKACPKASPKPLLGTEQCVWGPSYWCK |
| F.KACSMLP.IYKDECDEFVEQYEP.LIAAL.DEMNPDSL.LKI.ACPKASPK.LLGT.....G...W.. |
Retrocopy | FKKACSMLPGIYKDECDEFVEQYEPILIAALNDEMNPDSLYLKIRACPKASPKSLLGTGVQAAGVRTWRQ |
|
Parental | NMETAAQCHAVEHC |
| .........A...C |
Retrocopy | SLSATLLSIASATC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2005 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2005 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.