RetrogeneDB ID: retro_meug_2017

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold79892:13263..13764(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUP37
• Ensembl ID: ENSMEUG00000008843
• Aliases: None
• Description: nucleoporin 37kDa [Source:HGNC Symbol;Acc:29929]

Sequence

>retro_meug_2017
GTTTTAGCAAATCAGTCAGATTACATAAATGATTTGGTGTTTGCCCCCAAAGAAGTCCAAGAAATTGCAAGTCTGAGTGA
TGATCATACATGCAAGCTCTGGGACTTAGAAAGGAATCAGGAAGCTCATTTTGTTCTCCATTCCTCTGGAAAGAGTGCCT
GCTGGCATCCTGAGCAAGTATGGAAACTGATGGTTGCAGAGAAGAACAGAACAATCAGGTTCTATGATCTCATTACCCAG
CAGGCTCTCCTGTCTCCTGAATCTGAACAGATGCCATTAAGGTCAGCACATAGGTATTTACGAAACACCAGTTTAAGTTG
GAGCTGTTGCAGGAAATGATTGGTTAATCTGGAATATTACTCGGTCTACTTAACCATAAGATAAGAGATCTGTCCATATG
GATTGAGCCCATTTATTCAGGTGGTCAACAGTTAATGAAAACCTGCTTGCCACCACCAGCTACCCTGGCAAAAAAAGACC
ACTCAACTAATTCATCATTTG

Alignment

ORF - retro_meug_2017 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.33 %
• Parental protein coverage: 51.23 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VLAGHSDYINDLVFAPKEGQEIASVSDDHTCRVWDLEGNQKAHFVLRSAGMSVCWHPEESCKLMVAEKNG
          VLA..SDYINDLVFAPKE.QEIAS.SDDHTC..WDLE.NQ.AHFVL.S.G.S.CWHPE...KLMVAEKN.
Retrocopy VLANQSDYINDLVFAPKEVQEIASLSDDHTCKLWDLERNQEAHFVLHSSGKSACWHPEQVWKLMVAEKNR

Parental  TIRFYDLITQQAILSLESEQTPLMSAHWCFRNTFK-VGAVAGNDWLIWDITRSSYPQDKRPVHMERAHLF
          TIRFYDLITQQA.LS.ESEQ.PL.SAH...RNT...VGAVAGNDWLIW.ITRS..P.DKR.VHM..AHLF
Retrocopy TIRFYDLITQQALLSPESEQMPLRSAHRYLRNTSL>VGAVAGNDWLIWNITRST*P*DKRSVHMD*AHLF

Parental  RWSTVNENLFATTGYPGK-MTTQLLIHHL
          RWSTVNENL.ATT.YPGK...T..LIHHL
Retrocopy RWSTVNENLLATTSYPGK<KKTTQLIHHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2017 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2017 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008843	1 retrocopy	retro_meug_2017 ,
Mustela putorius furo	ENSMPUG00000011898	1 retrocopy	retro_mputfur_615,