RetrogeneDB ID: | retro_meug_2129 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold9281:25761..26420(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXL6 | ||
| Ensembl ID: | ENSMEUG00000009915 | ||
| Aliases: | None | ||
| Description: | F-box and leucine-rich repeat protein 6 [Source:HGNC Symbol;Acc:13603] |
Retrocopy-Parental alignment summary:
>retro_meug_2129
AAGGTGGAGAAGAGGATTCTCAGTTCTCTAGAATGGCTGGTGCCCAACAGGTTTTCATTACCACAGGAGTTTTCTCTATT
CAACTGGAAAACTATGTACCTCTGATGCTGAAATCTTTCAGTGAGTCTTGTCCCACCTCACATCTCTCAAGCTTTCCCAC
TGTCAGTCTGTGACACCAGAGGCCTTGGTTCCTTTGCCCAAGGCCTGACCCCAGGTGAATTGCCTCAACCTGCAGAACTG
CCAGGTGGTGCCAGCAGCAGTAGTTGGCTTCCTGGAGGCAGCAGGCAAACAACTCCAGCAGCTGTGACTAACTTCCAGTA
GCCAGATGACCTCCATTATCTCCTCACTGTTGAATGGATGTTGCCTCCAACTCCAGCTTCTTGAGGTGGACATAGGAATG
AAACCCAAGAGCCAGTGCTTTCGGATACAGATTGAAGTTCTGTAGGCTGGCTGTCCTCAATTCTAGGTCCTGCAGTTGCT
GAATCTGGTTTGGTCTCCCAAGCTAGGAAGGCATGGGGGTATCCCTGGGGCCTGGTTTCCCAGACCTGCAGGAACTCCAT
CTGATCACATCCACCACCATCTACATAAGTGATGAGATCCTGCACCACCTGCTGCATGCATCTCTTCACCTGTTGTGGTT
CATTGTTGGTGGAGCTGGA
ORF - retro_meug_2129 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 76.68 % |
| Parental protein coverage: | 58.71 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | KVEKRILSSLEWLVPNRFSLLRELSLFNWK-NYVPLMLKAVSESCP-HLTSLKLSHCQSVTAEALVPLSR |
| KVEKRILSSLEWLVPNRFSL..E.SLFNWK.NYVPLMLK..SESCP.HLTSLKLSHCQSVT.EALVPL.. | |
| Retrocopy | KVEKRILSSLEWLVPNRFSLPQEFSLFNWK<NYVPLMLKSFSESCP<HLTSLKLSHCQSVTPEALVPLPK |
| Parental | ACPQLDSLNLQNCQMVSAAVVGFLEAAA-QLRQLWLSYSSQMTSIISSLSNGCCPQLQLLEVDTGMKPNS |
| A.PQ...LNLQNCQ.V.AAVVGFLEAA..QL.QL.L..SSQMTSIISSL.NGCC.QLQLLEVD.GMKP.S | |
| Retrocopy | A*PQVNCLNLQNCQVVPAAVVGFLEAAGKQLQQL*LTSSSQMTSIISSLLNGCCLQLQLLEVDIGMKPKS |
| Parental | QHFRIHIEALQAGCPQLQVLRLLNLVWSPKVG-GRGVPLGPGFPELQELCLATSTITYVSDEILHRLLHA |
| Q.FRI.IE.L.AGCPQ..VL.LLNLVWSPK.G.G.GV.LGPGFP.LQEL.L.TST..Y.SDEILH.LLHA | |
| Retrocopy | QCFRIQIEVL*AGCPQF*VLQLLNLVWSPKLG>GMGVSLGPGFPDLQELHLITSTTIYISDEILHHLLHA |
| Parental | SPHLRVLDLRGCG |
| S.HL......G.G | |
| Retrocopy | SLHLLWFIVGGAG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_2129 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_2129 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000009915 | 2 retrocopies |
retro_meug_2129 , retro_meug_944,
|