RetrogeneDB ID: | retro_meug_279 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | GeneScaffold_9256:28706..29120(+) | ||
| Located in intron of: | ENSMEUG00000009190 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DMC1 | ||
| Ensembl ID: | ENSMEUG00000008939 | ||
| Aliases: | None | ||
| Description: | DNA meiotic recombinase 1 [Source:HGNC Symbol;Acc:2927] |
Retrocopy-Parental alignment summary:
>retro_meug_279
ACAGCTCAGCTTCCAGGAGCTGGAGGCTACCCAGGAGGAAAGGTGATCTTCGTTGATACGGAAAATACTTTTCGTCCAGA
CCGTCTTCGAGACATCGCTGACCGCTTTAACGTAGACCATGATGCTGTCCTGGACAACGTACTCTATGCCCGCGCTTATA
CCAGTGAGCATCAGATGGAGCTGCTGGACTACGTGGCTGCCAAGTTCCATGAGGAGGCCGGCATCTTCAAGCTTCTGATC
ATCGATTCAATCATGGCGCTCTTCCGCGTGGACTTCAGTGGCTGGGGCGAGTTAGCAGAGCGGCAGCAGAAACTGGCCCA
GATGCTGTCTCAGCTTCAGAAAATATCAGAAGAATACAACGTGGCTGTGTTTGTGACCAATCAGATGACTGCTGATCCCG
GGGCAACCATGACT
ORF - retro_meug_279 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98.55 % |
| Parental protein coverage: | 69.35 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TAQLPGAGGYPGGKVIFVDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFH |
| TAQLPGAGGYPGGKVIFVDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFH | |
| Retrocopy | TAQLPGAGGYPGGKVIFVDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFH |
| Parental | EEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMT |
| EEAGIFKLLIIDSIMALFRVDFSG.GELAERQQKLAQMLS.LQKISEEYNVAVFVTNQMTADPGATMT | |
| Retrocopy | EEAGIFKLLIIDSIMALFRVDFSGWGELAERQQKLAQMLSQLQKISEEYNVAVFVTNQMTADPGATMT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_279 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_279 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000008939 | 1 retrocopy |
retro_meug_279 ,
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