RetrogeneDB ID: | retro_meug_327 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold10188:9250..10102(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MCU | ||
| Ensembl ID: | ENSMEUG00000001448 | ||
| Aliases: | None | ||
| Description: | mitochondrial calcium uniporter [Source:HGNC Symbol;Acc:23526] |
Retrocopy-Parental alignment summary:
>retro_meug_327
AGTGTACCGGTGCCATCTGATGAGGTAGTCATTAATTACAGATACGGTCTTCCTTTGATAACTCTCACTTTGCCATCAAG
ACAGGAGCGCTGTCGTTTCACAGTCAAACCCATGTTAACCACGGTTGGTTCATTTCTCCAGGACATCCAGAATGAGGACC
GAGGTATTAAAACTACAGCTGTCTTCACCACAGATGGGAGCAGAATTCCATCTTCAATCTCAATGGAGATTTTGCTTACG
AATGATTTTAAACTCATGATAAATGACATGACATATGATGTTCATTGTCCTAGGAAAGAAAAACTGAGCAGCGAGCACAT
GACCAACATGGACGACATCAAGTCCTTGGTACAGAGACTCTTTACTGCTTTGCATGTGGAGGAGCATCAGGTCAAGAAGG
AACGCAGTTTACTGGAGAAAATTGAGGAGCTGAAGGAGCAGCTCCAGCCCCTGGAGGAGCTGAAAGCTAAAATTGAAGCT
GGCTCAGAGGCCAAAACCAACAGACTCTTGTGGACCGGCTTGGCCTTGATGTCCACTCAGGGTGGAATCTTGGCATGGCT
CACGTGGTGGGTGTACTCCTGGGACATCATGGAACCCGTCACCTACTTCATCACTTTTGGTAGCTCCATGACCTTCTTCG
CTTATTTCCTCCTCACTCGACAGGATTCTTCTTACTCACTCATTAAGAATCGACAATTCCTCTATTTCTTCCACAAAAGA
CTGAAGAAGAATGATTTTGATGTGCAACAGTATAACAAGTTAAAAGAAGATCTTGAAGAGGCTGAAGAGTCTCTGCAACG
TCTGCGCCAGCCTCTCCACTTGAGGTTACCAATCCAGGAAATCAAAGAGAAG
ORF - retro_meug_327 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.46 % |
| Parental protein coverage: | 81.38 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | STVVPSDDVTVVYQNGLPVISVRLPSRRERCQFTLKPISDSVGVFLRQLQEEDRGIDRVAIYSPDGVRVA |
| S..VPSD.V...Y..GLP.I...LPSR.ERC.FT.KP....VG.FL...Q.EDRGI...A....DG.R.. | |
| Retrocopy | SVPVPSDEVVINYRYGLPLITLTLPSRQERCRFTVKPMLTTVGSFLQDIQNEDRGIKTTAVFTTDGSRIP |
| Parental | SSTGIDLLLLDDFKLVINDATYHVRPPKRNLLGHENAATLNDVKTLVQQLYTTLCIEQHQLSKEKELVER |
| SS.....LL..DFKL.IND.TY.V..P....L..E......D.K.LVQ.L.T.L..E.HQ..KE..L.E. | |
| Retrocopy | SSISMEILLTNDFKLMINDMTYDVHCPRKEKLSSEHMTNMDDIKSLVQRLFTALHVEEHQVKKERSLLEK |
| Parental | LEELKEQLAPLEKVRIEISRKAEKRTTLVLWGGLAYMATQFGILARLTWWEYSWDIMEPVTYFITYGSAM |
| .EELKEQL.PLE.....I....E..T...LW.GLA.M.TQ.GILA.LTWW.YSWDIMEPVTYFIT.GS.M | |
| Retrocopy | IEELKEQLQPLEELKAKIEAGSEAKTNRLLWTGLALMSTQGGILAWLTWWVYSWDIMEPVTYFITFGSSM |
| Parental | ATYAYFVMTRQEYVYPEARDRQYLLFFHKGAKKTRFDLEKYNRLKDAIAQAELDLKRLRDPLQIHLPIRQ |
| ...AYF..TRQ...Y.....RQ.L.FFHK..KK..FD...YN.LK.....AE..L.RLR.PL...LPI.. | |
| Retrocopy | TFFAYFLLTRQDSSYSLIKNRQFLYFFHKRLKKNDFDVQQYNKLKEDLEEAEESLQRLRQPLHLRLPIQE |
| Parental | IGDK |
| I..K | |
| Retrocopy | IKEK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_327 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_327 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000003454 | 1 retrocopy | |
| Macropus eugenii | ENSMEUG00000001448 | 1 retrocopy |
retro_meug_327 ,
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