RetrogeneDB ID: retro_meug_402

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold110010:5953..7318(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000002907
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: OSGIN1
• Ensembl ID: ENSMEUG00000005187
• Aliases: None
• Description: oxidative stress induced growth inhibitor 1 [Source:HGNC Symbol;Acc:30093]

Sequence

>retro_meug_402
AATGGTCCTTCAGGAATCTGTCTGTCCTACCTACTCTCTGGCTATACTCCTTATGTGAAAGCTGATGCTGTCCATCCACA
CCCCATCCTGCAGAAGAAGCTGACCGAGAAGCCACATGTCTCTATCCTGGACCAGGACCTGGACTATCTATCAGAAGGCT
TGGAGGGCAGAAGTCAAAGCCCTGTGGCCCTGCTCTTTGATACTCTTCTGCGTCCAGACACAGATTTTGGAGGAAATACT
GAGTCTGTCCTTGCCTGGGAACACCAAGCGGAGCGAGTGATCCCCCACCTGGTCCTGGGTCGCAACCTCCCTGGAGGTGC
CTGGAATTCCATTGAAGGCTCCATGGTGACCTTAAGCCAGGGTGAGTGGATGGGGCTCCCTGATCTGCAATTTAAGGACT
GGATGCGGAAGACATACAGGGGACTGCGGGACAGCCGGGCCACAGGTGGAGACATCGCCCATTATTACCAGGATTATGTG
GTGAAGAAGGGACTGAGCCACAACTTCTTCTGTGGAACTGTGGTCACAGCTGTGGACATTGGGAGCACGGAGTCAGGGGA
GACCAGGAGCCAGCAAGATGGGAGCCCCCTGTTCTTGGTGAGTGGCTTTATGACCTCCACAGATGGGAGCCAGCAGCCTT
TCAGATTCCGTGCGCGCAATGTAGTCCTGGCCACAGGGACATCAGACAACCCAGCCCGGCTGGGCATTGTTGGAGAGGAT
CTCCCCTACGTTCATTATGACCTGTCTGCCTTAGAAGAGGCCATGAAGGCTGGGGATGTAACCCCCACATCTGACCCCGT
GCTCATCGTTGGGGCCAGGCTCTCAGCAGCCGATGCCATCCTGTATGCACGACGCTACAACCTCCCAGTGATCCATGCAT
TCCGCCGGCCTGTGGATGACCCTGGTCTCATCTTCAACCAACTCCCCAAGACAATGTACCCAGAGTACCAAAAAGTACAC
CAGATGATGCGGGAGAAATCTGTCCGCTCCTCCACTCGCTACAAAAGCTACTTGAGCCTGCCAAAACATCAGCCCCTGCT
CTTCCAGGAGGACCATGAGGCTGTGTTCCAAGATCAGAACGGGGAACACAGGGTATTCAGGGTCTCCCTTGTGCTGGTCC
TCATCGGCTCCTACCCTGACCTCTCATTCCTGGCCCATGGTGGCACTGACCTCACTGTGGACCCAGACCAACCACTCAGC
CCCAAGAGGAACCCCATTGAGGTTGACCCCTTCACCTACCAGAGCACCCGGCAGAGGCGCCTCTATGCCATGGGGCCCCT
GGTGGGAGACAACTTTGTGAGATTTGTGCAGGGAGGGGCATTGGCTGTAGCTAGTTCCCTGCTAAAAGAAAATAGGAAGC
CCCCC

Alignment

ORF - retro_meug_402 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.8 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL
          NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL
Retrocopy NGPSGICLSYLLSGYTPYVKADAVHPHPILQKKLTEKPHVSILDQDLDYLSEGLEGRSQSPVALLFDTLL

Parental  RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR
          RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR
Retrocopy RPDTDFGGNTESVLAWEHQAERVIPHLVLGRNLPGGAWNSIEGSMVTLSQGEWMGLPDLQFKDWMRKTYR

Parental  GLRDSRATAGDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESGRPGAQ-DGSPLFVVSGFMTSTDGS
          GLRDSRAT.GDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESG....Q.DGSPLF.VSGFMTSTDGS
Retrocopy GLRDSRATGGDIAHYYQDYVVKKGLSHNFFCGTVVTAVDIGSTESGETRSQQDGSPLFLVSGFMTSTDGS

Parental  QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGAGLSAADAI
          QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGA.LSAADAI
Retrocopy QQPFRFRARNVVLATGTSDNPARLGIVGEDLPYVHYDLSALEEAMKAGDVTPTSDPVLIVGARLSAADAI

Parental  LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYKGYLSLPKHQPLLFQE
          LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYK.YLSLPKHQPLLFQE
Retrocopy LYARRYNLPVIHAFRRPVDDPGLIFNQLPKTMYPEYQKVHQMMREKSVRSSTRYKSYLSLPKHQPLLFQE

Parental  DHEAVFHDQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR
          DHEAVF.DQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR
Retrocopy DHEAVFQDQNGEHRVFRVSLVLVLIGSYPDLSFLAHGGTDLTVDPDQPLSPKRNPIEVDPFTYQSTRQRR

Parental  LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP
          LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP
Retrocopy LYAMGPLVGDNFVRFVQGGALAVASSLLKENRKPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_402 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_402 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000005187	1 retrocopy	retro_meug_402 ,