RetrogeneDB ID: | retro_meug_424 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold112663:5464..6410(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ACSL4 | ||
| Ensembl ID: | ENSMEUG00000010350 | ||
| Aliases: | None | ||
| Description: | acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571] |
Retrocopy-Parental alignment summary:
>retro_meug_424
AAGAAAAGCCCTATGGCAAAACAAACAAAAGCTAAACCCAACTCAAACAGGTCTGGAAATCCATATTACCCCATCATCGA
CTTTGACTCACTAACTGGGATCGACACCAATGAAGCTGACACCCTGGATGAATTGTTTGATCATGTGGTAGCTAAGTTTG
GGGAGAAGGACTGCCTCAAGATCAGGGAACTGTTAAGTGAAGAAAACAAAATGCAACCTAATGGAAAAGTGTTTAAAAAG
TTAATCCTAAGAAACTATAAATGGATGAACTATGTCGAAGTGAACCAGAGAGTAAATCATTTCGGCATTGAACTTACTGC
ATTAATTCTGAAACCAAAGAGAACAATTGCCATCTTCTGTGAGACCAGGGTAGTATGGATGATTACAGCACAGAACTGTT
TTAAGTATAACTTTCCTCTTGTAACTCTACATGCAACTGTTGTCAAAGAGGCTGTAATCTGTGGGCTGAATGAATCAGGA
GCAGACTATCTAATTTCTAGTGTTGAACTTCTAGAAAGCAAACTTAAAACTGCACTGGTAGACATCAACTGTGTTCAACA
TATCATGTATGTGGGTAATAAAACCATTGATAAATCAGAATATGGTAAAGGATTTGAAATTCATAGCATGCATTCTGTGG
AAGATTTGAAATCTACACCAGAAATTACAAACATTCTTCCAAATAGACTGTCTCCCTCTGACTTTGGCTATCATGATGTA
TATCAGTGGCTCCACCAGCAGACCTAAGGGAGTGATGATGCATCATAGCAACCTGATAGCTTCAATGACAGGCTAATGTG
AGAGAATTCCTGGGCTGTCCCCAAAGGACACCTACATTGACTTCTTGCCTTTAGTTCACATGTTAGAATTGACAGCAGAA
ATATTGTGCTTTAACTATGGCTGCAGAATCCTATATTATTCTCCTTTTACACTCTCAGATCAATCC
ORF - retro_meug_424 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.75 % |
| Parental protein coverage: | 55.65 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KKSTMAKRIKAKPTSNKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVAKFGKKDCLGTRELLSEENE |
| KKS.MAK..KAKP.SN..G.PY.....FDSL..ID...ADTLD.LFDH.VAKFG.KDCL..RELLSEEN. | |
| Retrocopy | KKSPMAKQTKAKPNSNRSGNPYYPIIDFDSLTGIDTNEADTLDELFDHVVAKFGEKDCLKIRELLSEENK |
| Parental | MQPNGKVFKKLILGNYKWMNYVEVNQRVNHFGIGLTALGLKPKSTIAIFCETRAEWMIAAQTCFKYNFPL |
| MQPNGKVFKKLIL.NYKWMNYVEVNQRVNHFGI.LTAL.LKPK.TIAIFCETR..WMI.AQ.CFKYNFPL | |
| Retrocopy | MQPNGKVFKKLILRNYKWMNYVEVNQRVNHFGIELTALILKPKRTIAIFCETRVVWMITAQNCFKYNFPL |
| Parental | VTLYATLGKDAVIHGLNESEASYLITSVELLESKLKTALVDINCVQHIIYVGNKTIDKSEYPKGFEIHSM |
| VTL.AT..K.AVI.GLNES.A.YLI.SVELLESKLKTALVDINCVQHI.YVGNKTIDKSEY.KGFEIHSM | |
| Retrocopy | VTLHATVVKEAVICGLNESGADYLISSVELLESKLKTALVDINCVQHIMYVGNKTIDKSEYGKGFEIHSM |
| Parental | HSVEELGFKPENANILPNRPSPSD-LAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYI |
| HSVE.L...PE..NILPNR.SPSD.LAI.MY.SGST.RPKGVMMHHSNLIA.MTG.CERIPGL.PKDTYI | |
| Retrocopy | HSVEDLKSTPEITNILPNRLSPSD>LAIMMYISGSTSRPKGVMMHHSNLIASMTG*CERIPGLSPKDTYI |
| Parental | GYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQS |
| ..LPL.H.LELTAEI.CF.YGCRI.Y.SP.TLSDQS | |
| Retrocopy | DFLPLVHMLELTAEILCFNYGCRILYYSPFTLSDQS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_424 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_424 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000010350 | 1 retrocopy |
retro_meug_424 ,
|