RetrogeneDB ID: | retro_meug_456 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold117136:307..1062(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PPARG | ||
| Ensembl ID: | ENSMEUG00000007824 | ||
| Aliases: | None | ||
| Description: | peroxisome proliferator-activated receptor gamma [Source:HGNC Symbol;Acc:9236] |
Retrocopy-Parental alignment summary:
>retro_meug_456
AGTGATATCAACCAGCTGAACCAAGAGTCTATTGATGTCCAGGCCCTGATCAGACATTTCTATGACTCATACAGAAATTC
CTTCCTGCTGACCAAAGACCAGGAGAGGGAAATCTTGACAAGAAAGACAATGGACAAATAACCAATTGTTTTGTATGACA
AGAAATCCTTAATGATGGGAGAAGACCAGATTACTTTTAAGTACAACACATACCTGTAGGAACATAGCAAAGAAGTGGAC
AACCACATTTTCCAGACCTGTCAGTTCTACTATGTAGAGGCAGTCGAAGACATCACTGAGGATACTGAGATCATTCCAGG
TTTTCTCAATCTTTACTTGAATGAACAAGTGACCATCTTGATATATGGTGTTCATGAGAACATCTCCACCATGCTGACCT
CCTTAATGAATAAAGATGTGGTTCTTATATTTGACTGCCAAGGATTCATGATGAGGGAGTTTCTGGAGAGGCTTAGAAAA
CCCTTTGGTTACTTTATAGTGCCCAAGTATGAGTTTGTGGTAAAGTTCAATGCATTGAAATTAGATCATAGAGACTAAGT
AATATTTATAGTTGTCATTATCTCACTGGAGACCTCCCTGGTATGCCGAATGTAAAGGCCAATGAGGACATCTAGTGTAA
CTTTCTGAATGCTTTGGAGCTCCAGCTCAAGCTGAAGCACCTTGAAGTATCCCAACTGCTTGCCAGTTTCCTTCAGAAAA
TGACAGACCTCAGTCAGATTGTAACTGAGCATGTC
ORF - retro_meug_456 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.4 % |
| Parental protein coverage: | 50.1 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | SDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHNT |
| SDI.QLN.ES.D..AL..H.YDSY..SF.LTK...R.ILT.KT.DK.P.V.YD..SLMMGED.I.FK.NT | |
| Retrocopy | SDINQLNQESIDVQALIRHFYDSYRNSFLLTKDQEREILTRKTMDK*PIVLYDKKSLMMGEDQITFKYNT |
| Parental | PLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKNIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDG |
| .L.E.SKEV...IFQ.CQF..VEAV..ITE....IPGF.NL.LN.QVT.L.YGVHE.I.TML.SLMNKD. | |
| Retrocopy | YL*EHSKEVDNHIFQTCQFYYVEAVEDITEDTEIIPGFLNLYLNEQVTILIYGVHENISTMLTSLMNKDV |
| Parental | VLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAIKFNALELDDSDLAIFIAVII-LSGDRPGLLNVKPIE |
| VLI...QGFM.REFL..LRKPFG.F..PK.EF..KFNAL.LD..D..IFI.VII.L.GD.PG..NVK..E | |
| Retrocopy | VLIFDCQGFMMREFLERLRKPFGYFIVPKYEFVVKFNALKLDHRD*VIFIVVII<LTGDLPGMPNVKANE |
| Parental | DIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHV |
| DI..N.L.ALELQLKL.H.E.SQL.A..LQKMTDL.QIVTEHV | |
| Retrocopy | DI*CNFLNALELQLKLKHLEVSQLLASFLQKMTDLSQIVTEHV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_456 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_456 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000007824 | 1 retrocopy |
retro_meug_456 ,
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