RetrogeneDB ID: retro_meug_462

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold117999:4133..4519(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: QDPR
• Ensembl ID: ENSMEUG00000002897
• Aliases: None
• Description: quinoid dihydropteridine reductase [Source:HGNC Symbol;Acc:9752]

Sequence

>retro_meug_462
CTCAGCCATCACCTTGCTACCAAATACCTCAAGGATGGAGGTCTTCTGACCTTGGCCGTGGTTCTGGATGCTTTAGATGC
AATGCCAGGAATGATTGGCTATGGCATGGCCAAGGGAATGGTCCATCAGCTGTGTCAGAGCCTGCCTGGGGAAAACAGCG
TCATGCCACCAGGTTCCACACTATAGTTGTCCTCCCGGTTACCCTGAATACTCCAAAAAATAAGAAATCAATGCCTGACG
CAGATTGTGGCACCTGCACCCCATTAGAATTCCTTGTTGAAATCTTTCACAACTGGTTCACAGGAAAAATACACAGGCCA
AACTCTGGAAGCCTAATCCAGCTGGTGACCACAGGAGGGAAGACTGAGCTGACACCAGGCTATTTT

Alignment

ORF - retro_meug_462 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.46 %
• Parental protein coverage: 52.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ISSHLATKHLKDGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGENSGMPPGSA-AIAVLPVTL
          .S.HLATK.LKDGGLLTLA....ALD..PGMIGYGMAKG.VHQLCQSL.GENS.MPPGS...I.VLPVTL
Retrocopy LSHHLATKYLKDGGLLTLAVVLDALDAMPGMIGYGMAKGMVHQLCQSLPGENSVMPPGST<TIVVLPVTL

Parental  DTPMNRKSMPDADFGAWTPLEFLVETFHNWITGK-NRPNSGSLIQVVTTGGKTELTPAYF
          .TP.N.KSMPDAD.G..TPLEFLVE.FHNW.TGK..RPNSGSLIQ.VTTGGKTELTP.YF
Retrocopy NTPKNKKSMPDADCGTCTPLEFLVEIFHNWFTGKIHRPNSGSLIQLVTTGGKTELTPGYF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_462 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_462 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000002897	1 retrocopy	retro_meug_462 ,
Myotis lucifugus	ENSMLUG00000003473	1 retrocopy	retro_mluc_2092,
Monodelphis domestica	ENSMODG00000000879	1 retrocopy	retro_mdom_844,
Rattus norvegicus	ENSRNOG00000003253	1 retrocopy	retro_rnor_2542,
Tarsius syrichta	ENSTSYG00000002627	2 retrocopies	retro_tsyr_1237, retro_tsyr_1696,