RetrogeneDB ID: retro_meug_464

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold118558:4..565(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GIPC2
• Ensembl ID: ENSMEUG00000010616
• Aliases: None
• Description: GIPC PDZ domain containing family, member 2 [Source:HGNC Symbol;Acc:18177]

Sequence

>retro_meug_464
CTGACCACCCCTGACAATGGAGCTGGCTATGTGTTTATCAAGCAGATCAAGGAGGGGAGTGTCATTGACCGGATCCAAGT
GATCAGTGTAAATGATATGATAGAATCCATCAATGGGCAGAACCTGCTGGGCTACAGGCACAAGGAGGTGGCCAAGATGC
TCAAGGACCTGCCAAGAGACCGCACCTTCACCCTCAAGCTTACAGAGCCCCGGAAATACTTTGACATGATGAGTCAGAAG
TCAGCAGGGGCCTTCCCTGGCTCAAAACCCCAACTTGGCCCTAGCAGGGGGACCCTTTGCCTCTGTTCTCAGGGTCCAGC
TATAGTGGAGGAACTGCCTTCAGCATTGGAGGAGAAGGCTATTGAGAAGGTGGATGACCTCCCAGAGAATTACATGGGCA
TCCAGGACAAGGAGCTGGCAGCCACCATGGTAGAGCTGGGCAGGGACAAGCAGAACCCAGAGGAATAGGCAGAGGCTTTA
GATAAATGACTAGGTGACTTTGCCTTCCCTGACAAGTTTGTCTTCAATGTGCGGGGAGCAATTAGAGATACCAAAGTGGG
A

Alignment

ORF - retro_meug_464 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.68 %
• Parental protein coverage: 58.36 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LTITDNGAGYAFIKKIKYGSLMDSVKNVCVGDHIEEINGQNIVGWRHFDVAKMLRELQKDQTFSLKLIEP
          LT..DNGAGY.FIK.IK.GS..D......V.D.IE.INGQN..G.RH..VAKML..L..D.TF.LKL.EP
Retrocopy LTTPDNGAGYVFIKQIKEGSVIDRIQVISVNDMIESINGQNLLGYRHKEVAKMLKDLPRDRTFTLKLTEP

Parental  KKAFEIQPRSGAGKTTVGKITSG--KGTLRLRSKGPATVEELPSEIDEKAIQKVDYFLELYLGIRDIELA
          .K.F.......AG.....K...G...GTL.L.S.GPA.VEELPS...EKAI.KVD...E.Y.GI.D.ELA
Retrocopy RKYFDMMSQKSAGAFPGSKPQLGPSRGTLCLCSQGPAIVEELPSALEEKAIEKVDDLPENYMGIQDKELA

Parental  TTIFEVGKDKLNPDEFAVALDETLGDFAFPDEFVFDVWGTIGDAKQG
          .T..E.G.DK.NP.E.A.ALD..LGDFAFPD.FVF.V.G.I.D.K.G
Retrocopy ATMVELGRDKQNPEE*AEALDK*LGDFAFPDKFVFNVRGAIRDTKVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_464 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_464 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010616	1 retrocopy	retro_meug_464 ,
Otolemur garnettii	ENSOGAG00000007256	1 retrocopy	retro_ogar_938,