RetrogeneDB ID: retro_meug_507

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold12615:9917..11006(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000003932
• Aliases: None
• Description: None

Sequence

>retro_meug_507
TTGGAGGGCCTAGCCGGCACCATTACCTCCAAAGAGTGGAGCTTTCCCACCTCTTCTGAGGGGAGCAACATCTCCGAGGG
CAGCGAGACTTTGGACAAACCCATTGACAATGATGCAGAGGGAGTGTGGAGCCCTGACATTGAGCAGAGCTTCCAAGAAG
CCCTTGCCATCTACCCACTCTGTGGCAGGTGCAAGATCATCTTATCGGATAAGGGCAAGATGTGTGGCAGTAATGAGCTG
ATTGTTCATTGTATTAAGCTCCAGACAGGGAAAACTCGAACCAGGAAGCAGGTATCTAGCCACATCCAGGTACTGGCCTA
TCATAAAACCCGGGAGATCCAAGTCAAGTTAAAGGGTCAGGCAGCTAAGGACAAAGCCCTACAGAATATGGCTACCATGT
CATCTTCTCAGATCATCTCTGCTACAGCCTTCCACAATAAAATGGCCCTTACTCGGGGACCAGCATAACCAGCCACCTCA
GGGTTTTGTCAAGGAACTTTGCCAGGCCAAGCTGGAACTTCCCATGATGTAAAACCTTTCTCTCAACAAACCTACGCTGT
TCAGCCCCTGCTCCCTTTGCCAGGGTTTGAATCTCCTGCTGGATCTACCCTGTCACCGTCAACCCCTCCATGTCAAGGCC
GAAGTGTGGCCAGCTCCAAGCTCTGGATGTTGGAGTTCTCTGCCTTCTTGGAGCAGCAGCAAGACCCAGACATGTATAAC
AAGCACCTATTTGTACACATTGGCCAGTCCAGTCCCAGCTACAGTGACCCCTACCTCAAAGCAGTGGATATCCACCAGAT
CTATGACAAATTCCCTGATAAAAAGGGAGGACTCAAGGAACTCTTTGAACAAGGACCCTCAAATGCCTTCTTCCTTGTCA
AATTCTGGGCTGACCTCAACACCAACATGGAGGACAAAGGCAGCTCTTTTTATGGTGTCTCCAGTCAGTATGAGAGTCCT
GAGAACATGATCATCACCTGCTCCACCAAAGTCTGCTCCTTTGGCAAACAGGTTGTGGAGAAAGTAGAGACAGATTACGC
CCACTATGAGAATGGCCACTAATCGTATGGAATTCACCAATCTCCTCTC

Alignment

ORF - retro_meug_507 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.43 %
• Parental protein coverage: 84.19 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LEGLAGTITSNEWSSPTSPEGSNVSEGSEALDKPIDNDAEGVWSPDIEQSFQEALAIYPPCGRRKIILSD
          LEGLAGTITS.EWS.PTS.EGSN.SEGSE.LDKPIDNDAEGVWSPDIEQSFQEALAIYP.CGR.KIILSD
Retrocopy LEGLAGTITSKEWSFPTSSEGSNISEGSETLDKPIDNDAEGVWSPDIEQSFQEALAIYPLCGRCKIILSD

Parental  EGKMY-RNELIARYIKLRTGXXXXXXXVSSHIQVLARRKAREIQAKLKDQAAKDKALQNMATMSSAQIIS
          .GKM...NELI...IKL.TG.......VSSHIQVLA..K.REIQ.KLK.QAAKDKALQNMATMSS.QIIS
Retrocopy KGKMCGSNELIVHCIKLQTGKTRTRKQVSSHIQVLAYHKTREIQVKLKGQAAKDKALQNMATMSSSQIIS

Parental  ATAFHNKMALTRGPAYPAVSGFWQGTLPGQAGTSHDVKPFSQQTYAVQPPLPLPGFESPAGSTLSPSTPP
          ATAFHNKMALTRGPA.PA.SGF.QGTLPGQAGTSHDVKPFSQQTYAVQP.LPLPGFESPAGSTLSPSTPP
Retrocopy ATAFHNKMALTRGPA*PATSGFCQGTLPGQAGTSHDVKPFSQQTYAVQPLLPLPGFESPAGSTLSPSTPP

Parental  WQGRSVASSKLWMLEFSAFLEQQQDPDTYNKHLFVHIGQSSPSYSDPYLEAVDIHQIYDKFPDKKGGLKE
          .QGRSVASSKLWMLEFSAFLEQQQDPD.YNKHLFVHIGQSSPSYSDPYL.AVDIHQIYDKFPDKKGGLKE
Retrocopy CQGRSVASSKLWMLEFSAFLEQQQDPDMYNKHLFVHIGQSSPSYSDPYLKAVDIHQIYDKFPDKKGGLKE

Parental  LFERGPSNAFFLVKFWADLNTNIEDEGSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETEYAHYE
          LFE.GPSNAFFLVKFWADLNTN.ED.GSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVET.YAHYE
Retrocopy LFEQGPSNAFFLVKFWADLNTNMEDKGSSFYGVSSQYESPENMIITCSTKVCSFGKQVVEKVETDYAHYE

Parental  NGHYSYRIHRSPL
          NGH.SY.IH.SPL
Retrocopy NGH*SYGIHQSPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_507 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_507 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000003932	2 retrocopies	retro_meug_1212, retro_meug_507 ,
Monodelphis domestica	ENSMODG00000018340	1 retrocopy	retro_mdom_1801,