RetrogeneDB ID: retro_meug_523

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold12979:17321..17882(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SH3GL2
• Ensembl ID: ENSMEUG00000015197
• Aliases: None
• Description: SH3-domain GRB2-like 2 [Source:HGNC Symbol;Acc:10831]

Sequence

>retro_meug_523
ATGTCTGTGTCTGGACTGAAGAAGCAGTTCCACAAAACTAGTTACTTCTTTAGTGAAAAAATCAGTCGAGTAGAAAGAAC
AAAACTAAATGAAGAATTCCTAGAAATGCAGAGGAAAGCAGAAGTAACCAATAGAGCAGTTGTAGAACTTCTTACAAAAT
GCACTGATTATCTTCAGCCAAATCCAGCATACAGAATGAAGCTAGGAATGCAGAATACCATGTCCAGGATCACAGGACAG
ATGGGAACCTCAGGATACCCACAGCCTGAAGAGTTATTGGGAGAGGCCATGCTGCAATATGGAACAGAGCTTGGAGAAGA
TGCTACGTTTGGCCAGACATTGTTGAATATTGTTCAATCAATGAAGTTGATGGCTGATATGAAAGACTCTTTTGATATCA
ATGTGAAACAAAACTTTATTGATCCACTACAGTTATTACAAGAGAAAGATTTAAAAGAGATTGGGCATCATTTGAAAAAG
CTGGAAGGCCATTGTTTGGACTATGACTACAGAAAGAGACCAGTTTCTAGGATATCAGGTGAAGAATTATGAAAAGCAAT
C

Alignment

ORF - retro_meug_523 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.68 %
• Parental protein coverage: 53.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFREMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSM
          MSV.GLKKQFHK.....SEK....E.TKL...F.EM.RK..VT.RAV.E..TK...YLQPNPA.R.KL.M
Retrocopy MSVSGLKKQFHKTSYFFSEKISRVERTKLNEEFLEMQRKAEVTNRAVVELLTKCTDYLQPNPAYRMKLGM

Parental  INTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFI
          .NTMS.I.GQ....GYPQ.E.LL.EAML..G.ELG....FG..L......M......KDS.D..VKQNFI
Retrocopy QNTMSRITGQMGTSGYPQPEELLGEAMLQYGTELGEDATFGQTLLNIVQSMKLMADMKDSFDINVKQNFI

Parental  DPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQAL
          DPLQ.L..KDL.EI.HHLKKLEG..LD.DY.K.....I..EEL..A.
Retrocopy DPLQLLQEKDLKEIGHHLKKLEGHCLDYDYRKRPVSRISGEEL*KAI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_523 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_523 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010823	1 retrocopy	retro_amel_1668,
Choloepus hoffmanni	ENSCHOG00000001689	2 retrocopies	retro_chof_1007, retro_chof_24,
Macropus eugenii	ENSMEUG00000015197	1 retrocopy	retro_meug_523 ,
Macaca mulatta	ENSMMUG00000000273	1 retrocopy	retro_mmul_1264,
Pan troglodytes	ENSPTRG00000020792	1 retrocopy	retro_ptro_576,