RetrogeneDB ID: retro_meug_53

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_10150:36356..37108(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000006819
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: EARS2
• Ensembl ID: ENSMEUG00000015505
• Aliases: None
• Description: glutamyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:29419]

Sequence

>retro_meug_53
TTCATGCATTTGGGAGGCCTACGAACTGCCTTGTATAACTACACCTTTGCCAAGAAATACAAAGGGAGTTTCATCCTGAG
GTTGGAGGATACAGATCAAACCCGCCTGGTGCCTGGGGCTGCAGAGAACATCGAGGACATGTTGGAGTGGGCAGGCATTC
CTCCTGATGAAAGTCCTTGGTGTGGAGGCCCTGTCGGGCCCTACCAGCAGTCTTAGGGCCTGGAGCTCTATGCCCAAGCC
ACTGAGGCACTATTGCGGACTGGAGCTGCTTACTATTGCTTCTGTACCCCATGGTGCCTGGAGCTGCTGAAAAAAGAGGC
CCTCAGGAACCATCAGACACCCCGGTATGACAATCAGTGCAAGCTCTTGAGTCCTGAGCATGTGGCCAGGAAATTGGCAG
AAGGTGCCAAGCCAACTGTCCGCTTGCGTCTGGAGGAGGGAGCTGAGACTTTCCAGGACCTGGTATATGGCTGGAACCGG
CATGAAGTGGCCAGTGTTGAGGGTGACCCTGTGATCTTGAAAAGTGATGGTTTTCCCACCCATCACCTGGCCTGTGTGGT
GGATGACCATCATCTGGGCATTAGCCATGTTCTTCGAGGCAGTGAGTGGCTTGTCTCTACTGCCAAACATCTCCTTTTGT
ACAGGGCCCTGGGTGGGGAGCCACCCCACTTTGCCCATCTGCCTCTGCTTCTAACAAAGATGGCGGCAAGGGGACATCTT
TCTGGAATACTTTGCTTCAGCTGGCTTTCTTT

Alignment

ORF - retro_meug_53 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.29 %
• Parental protein coverage: 62.03 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FMHLGGLRTALYNYIFAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGILPDESPRRGGPVGPYQQ
          FMHLGGLRTALYNY.FAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGI.PDESP..GGPVGPYQQ
Retrocopy FMHLGGLRTALYNYTFAKKYKGSFILRLEDTDQTRLVPGAAENIEDMLEWAGIPPDESPWCGGPVGPYQQ

Parental  SQRLELYAQATEALLRTGAAYYCFCTPRRLELLKKEALRNHQTPRYDNRCRLLSPEHVARKLAEGAKPTV
          S..LELYAQATEALLRTGAAYYCFCTP..LELLKKEALRNHQTPRYDN.C.LLSPEHVARKLAEGAKPTV
Retrocopy S*GLELYAQATEALLRTGAAYYCFCTPWCLELLKKEALRNHQTPRYDNQCKLLSPEHVARKLAEGAKPTV

Parental  GLRLEEGAETFQDLVHGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDHHMGISHVLRGSEWLVSTAKH
          .LRLEEGAETFQDLV.GWNRHEVASVEGDPVILKSDGFPT.HLACVVDDHH.GISHVLRGSEWLVSTAKH
Retrocopy RLRLEEGAETFQDLVYGWNRHEVASVEGDPVILKSDGFPTHHLACVVDDHHLGISHVLRGSEWLVSTAKH

Parental  LLLYRALGWEPPHFAHLPLLL-NKDGSK-LSKWQGDIFLEYF
          LLLYRALG.EPPHFAHLPLLL.NKDG.K..S.W.....L..F
Retrocopy LLLYRALGGEPPHFAHLPLLL<NKDGGKGTSFWNTLLQLAFF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_53 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_53 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015505	1 retrocopy	retro_meug_53 ,
Rattus norvegicus	ENSRNOG00000025353	1 retrocopy	retro_rnor_80,