RetrogeneDB ID: | retro_meug_548 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold134640:4322..4943(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HAAO | ||
| Ensembl ID: | ENSMEUG00000004160 | ||
| Aliases: | None | ||
| Description: | 3-hydroxyanthranilate 3,4-dioxygenase [Source:HGNC Symbol;Acc:4796] |
Retrocopy-Parental alignment summary:
>retro_meug_548
CTCTTTTTCCAGATTGAAGGTCACATGGTTCATAAGATCTTGGAGCAAGGTCAGCACCAAGATGTGCTCATCTGCCAGGG
GGAGATATTTCTCCTGCCTGCTGGTATTCCCCATTCCCTGCAGAGGTTTGCCAACACTGTGGGGCAGGTCATGGAGTGAG
AAAGACAGAAGACAGAGGTAGATGGGCTCAGATACTATGTTGGAGACACAACAAATGTCCTTTTGGAGAAGTGGTTCTAC
TATCAGGATCTCGGCACGCAACTCGCACCAATCATCCGGGAGGTTTTCAACTCTGAACAGTCCAAGACAGGAAAACCTCA
CCCAGACCAGCTGCTCCAAGAGCTACCCTTCCCCCTGGGCACAAGGGCTGTCATGGAGCCACTGGCCCTTCAGCGATGAT
TGGCCAACCATTCTGTGGAGCTACAGGCAGGGAGTACCCTCAGCCTATTTGGAGACATGTATGAGACACAGGTGACAGTC
TATGGATCTGGCAGCAGCAGAGGTCCTAAACTGGATGTGGACGTGTGATTTTGGCATCCAGAAGGGTCTTCAGTGGTGAC
CATTGGAGGACAGAACCTAAGCCTGGCACAAGATGATGGCCTCTTTGTGCCCACTGGGAGT
ORF - retro_meug_548 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.61 % |
| Parental protein coverage: | 72.38 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | LFFQIKGHMVLKILEKGQHRDVPIHQGEIFLLPAGIPHSPQRFANTVGLVIERERLKTEVDGLRYYVGDT |
| LFFQI.GHMV.KILE.GQH.DV.I.QGEIFLLPAGIPHS.QRFANTVG.V.E.ER.KTEVDGLRYYVGDT | |
| Retrocopy | LFFQIEGHMVHKILEQGQHQDVLICQGEIFLLPAGIPHSLQRFANTVGQVME*ERQKTEVDGLRYYVGDT |
| Parental | TNVLFEKWFYCEDLGTQLAPIIQEFFNSEQYKTGKPHPDQLLQEPPFPLSTRAVMEPLVLQRWLADHRVE |
| TNVL.EKWFY..DLGTQLAPII.E.FNSEQ.KTGKPHPDQLLQE.PFPL.TRAVMEPL.LQR.LA.H.VE | |
| Retrocopy | TNVLLEKWFYYQDLGTQLAPIIREVFNSEQSKTGKPHPDQLLQELPFPLGTRAVMEPLALQR*LANHSVE |
| Parental | LQAGSTLSLFGDTYQTQVTVYGSGSSKGPKLDVDVWFWQLEGSSMMTIGGQNLSLAQEDSLLVPKGT |
| LQAGSTLSLFGD.Y.TQVTVYGSGSS.GPKLDVDV.FW..EGSS..TIGGQNLSLAQ.D.L.VP.G. | |
| Retrocopy | LQAGSTLSLFGDMYETQVTVYGSGSSRGPKLDVDV*FWHPEGSSVVTIGGQNLSLAQDDGLFVPTGS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_548 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_548 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000004160 | 1 retrocopy |
retro_meug_548 ,
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