RetrogeneDB ID: | retro_meug_589 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold142824:1032..2012(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NR2E1 | ||
| Ensembl ID: | ENSMEUG00000015817 | ||
| Aliases: | None | ||
| Description: | nuclear receptor subfamily 2, group E, member 1 [Source:HGNC Symbol;Acc:7973] |
Retrocopy-Parental alignment summary:
>retro_meug_589
GGAGGATGCCCAGTGGATAAGACACACAGAAACCAATGCAGGGCTTGTCGTTTGAAGAAGTGTTTGGAAGTCAATATGAA
CAAAGATTCTGTGGAACATGAGCGAAGGCCCAGGAAGTCTCCTATCAGCAAGGAGGTTACCCTGTATTTTGGTGGCCACA
AGGAGGAGGTCGGTGTAGCCCCTCACTTCCCTTCTGCAGCCCTACCTGCCCTGGCTTTCTTCACGCAGTCACGTAACTGG
AGCAACAAAACCTGGAACTGAGGGCCATGTCTGGCACCCCGGAGGGACAAGCATTGGTGGAGCTGGCCCAGCCCATGCCC
AAGTATCCTCATGAGTTTAATGGAGCCCCCATGTATCTCTATGAAGTGGCCACTGAGTCTGTATGTGAACCAGCAGTCAG
ACTCCTTTTCATGAGCATTAAATGGGCCAGATGTGTTCCAGCCTTCTCCACTCTGTTCTTGCAAGATCAGCTGATGCTTT
CGGAAGATGCTTGGAGAGAACTGTTTGTTCTAGGAATAGCACAATGGGCCACTCCAGTTGATGCTAACACTCTACTGGAT
GTATCTGGCATAAGTGGTGAAAATACAGATTCACAGAAGCTGAGTAAGATCATCTCTGAAATCCAGGCTTTGCAGGATGC
AGGGCGTTGATTCAGACAACTTTGGCTGGACGCAGTTGAACTTGCCTGTCTCAAATGCATTGTCATTTTCAAATCTGTAC
CTACACACAGTGGTTCTGAACTGAGAAGTTTCTGGTATGCCGTGGTCATTGCAGCACTTCAAAATGAAGCTCAACTAACA
CTTAACAGTTATATCCACACCAGGTATCCACTTAGCCTTGTCCCTTTGGGAAACTCTTGTTGCTTCTGCCAGCCTTATGC
TCCATTAGCTCATCTACAATAGAAGTGTTTTTCAAGAAAACCCACTGGCAATGTGCCAATTATGAGACTGCTTTCAGATA
TGTACAAATTCAATGACATC
ORF - retro_meug_589 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 82.48 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | GGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAPHFPSAALPA |
| GGCPVDKTHRNQCRACRLKKCLEVNMNKD.V.HER.PR.S.I.K.V.LYF.GHKEE.G.APHFPSAALPA | |
| Retrocopy | GGCPVDKTHRNQCRACRLKKCLEVNMNKDSVEHERRPRKSPISKEVTLYFGGHKEEVGVAPHFPSAALPA |
| Parental | PAFFT-AVTQLEQHNLELAAVSGTPERQTLVGLAQPTPKYPHEVNGAPMYLYEVATESVCESAARLLFMS |
| .AFFT.AVT.LEQ.NLEL.A.SGTPE.Q.LV.LAQP.PKYPHE.NGAPMYLYEVATESVCE.A.RLLFMS | |
| Retrocopy | LAFFT<AVT*LEQQNLELRAMSGTPEGQALVELAQPMPKYPHEFNGAPMYLYEVATESVCEPAVRLLFMS |
| Parental | IKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGENTDSQKLSKIISEIQ |
| IKWA..VPAFSTL.LQDQLML.EDAWRELFVLGIAQWA.PVDANTLL.VSG..GENTDSQKLSKIISEIQ | |
| Retrocopy | IKWARCVPAFSTLFLQDQLMLSEDAWRELFVLGIAQWATPVDANTLLDVSGISGENTDSQKLSKIISEIQ |
| Parental | ALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYP-T |
| ALQ.....FRQL.LDA.E.ACLKCIV.FK.VPTHSGSELRSF..A..IAALQ.EAQLTLNSYIHTRYP.T | |
| Retrocopy | ALQDAGR*FRQLWLDAVELACLKCIVIFKSVPTHSGSELRSFWYAVVIAALQNEAQLTLNSYIHTRYP<T |
| Parental | QPCRFGKLLLLLPALRSISPSTIEEVFFKKT-IGNVPITRLLSDMYKSSDI |
| .PC.FGKLLLLLPAL.SIS.STI.EVFFKKT..GNVPI.RLLSDMYK..DI | |
| Retrocopy | *PCPFGKLLLLLPALCSISSSTI-EVFFKKT>TGNVPIMRLLSDMYKFNDI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_589 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_589 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000015817 | 1 retrocopy |
retro_meug_589 ,
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