RetrogeneDB ID: retro_meug_615

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold14661:30245..30733(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CYB5R2
• Ensembl ID: ENSMEUG00000001991
• Aliases: None
• Description: cytochrome b5 reductase 2 [Source:HGNC Symbol;Acc:24376]

Sequence

>retro_meug_615
GATGCCACTGATTTCTGAGGGCCCAGACAGGCTCTGACTTATAATGGACCAGGTAAGCTGGCAATTAAACCAGATAAGAA
GAGTGAACTAAAATTGTTTGCCAAGAATTTGGAATGATTGCTGGTGGGACAGAAATAATACCAATGCTGCAGCTGATTCG
GCACATTACCAAGGACCCTGAAGATGGTTCCAAGTACTCTCTTATTTTTGCTAACCAGACTGAAGAAGATACTTTACCGA
GAACAGAGCTAGAAGAAATGATGAAGGATCATCCAAACCAGTTTAGTCTCTGGTATACTCTGGACAGGCCTCCTAATGAT
TGGAAGTATAGCTCTGGATTCATTAATGCAGACATGATTAAGGATCATCTTCCACTACCAGGAGATGATACCATCATTTT
GATGTGTGGTCCTCCTTCAATGATCCTGTTTGCCTGTCAATCCAACCTGGAAAAACTGGGCTATGTTCAAGACAAGACTT
TTGCCTAC

Alignment

ORF - retro_meug_615 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.85 %
• Parental protein coverage: 59.21 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DTIDFRGPNGLLTYNGPGKLAIKPDKKSEPKMKFAKNL-GMIAGGTGITPMLQLIRHITKDPEDGTKCSL
          D..DF.GP...LTYNGPGKLAIKPDKKSE.K..FAKNL.GMIAGGT.I.PMLQLIRHITKDPEDG.K.SL
Retrocopy DATDF*GPRQALTYNGPGKLAIKPDKKSELKL-FAKNL<GMIAGGTEIIPMLQLIRHITKDPEDGSKYSL

Parental  IFANQTEEDILLRTELEEVVKNHPNQFSLWYTLDRPPNDWKYSSGFINADMIKDHLPPPGDDTVILMCGP
          IFANQTEED.L.RTELEE..K.HPNQFSLWYTLDRPPNDWKYSSGFINADMIKDHLP.PGDDT.ILMCGP
Retrocopy IFANQTEEDTLPRTELEEMMKDHPNQFSLWYTLDRPPNDWKYSSGFINADMIKDHLPLPGDDTIILMCGP

Parental  PPMIQFACQPNLEKLGYSQDKTFAY
          P.MI.FACQ.NLEKLGY.QDKTFAY
Retrocopy PSMILFACQSNLEKLGYVQDKTFAY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_615 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_615 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001991	1 retrocopy	retro_meug_615 ,