RetrogeneDB ID: retro_meug_672

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold156092:2244..2812(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PARP16
• Ensembl ID: ENSMEUG00000001881
• Aliases: None
• Description: poly (ADP-ribose) polymerase family, member 16 [Source:HGNC Symbol;Acc:26040]

Sequence

>retro_meug_672
CTGCCAAACCTGAAGAATTTCTCCAGTCTGCAGATGACAAAGATAAAAGGGAATAGAATCTAGTGAGCTGAATTTTGTCC
TCAGAGGGTCTTACTGTATATAGCCTAGTGAAAACAGAGTATGTGAAGATAAAAAAACTCATGTTAATTTCAGGCACCAT
AGTCACTATACCTGACTGTCTGTTTGAAATAGTATATTCCAGTCCAGTGCATGACGAATTTCATGAAACCAAAGGAGAAA
GTGATATTATCTATGCTTTTCATGGGAACCACCTATAAAACTTTCATTCCATTATACATAATAGCTTACACTGCCACTTA
ATCAAGACTTCCTTGTTTGGTGAAGTGACCTGCCTTACCAGTGACATAAGTCCTGTTATTTTTACAGTCCTCATGTTATG
GGGTGGCTGCACAGCGTCTTGGGTCATATCCTGAGTTGTTTGACATTGTGTGAGATCACCAACTATTCAGATGTCAAGTG
CCAAACCAAGAAAAAGGATTCAGAAGAAATAAATTGAAAAAGAGTGAGATCCAAACACAGTGAAGGGGGAGATTCCCCAC
CAGAATAC

Alignment

ORF - retro_meug_672 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.83 %
• Parental protein coverage: 58.28 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LPNLK-ELLQSADDKDKRAWNLVSWILSSKVLTLHSIGKTEYVKIQELMGISDTSVPAPDFLFEIVYSGR
          LPNLK.E.LQSADDKDKR..NLVS.ILSS..LT..S..KTEYVKI..LM.IS.T.V..PD.LFEIVYS..
Retrocopy LPNLK<EFLQSADDKDKRE*NLVS*ILSSEGLTVYSLVKTEYVKIKKLMLISGTIVTIPDCLFEIVYSSP

Parental  VDAKFHETKGERDLIYAFHGSRLENFHSILHNGLHCHLNKTSLFGEGTYLTSDLSLAL-LYSPHGMGWQH
          V...FHETKGE.D.IYAFHG..L.NFHSI.HN.LHCHL.KTSLFGE.T.LTSD.S.....YSPH.MGW.H
Retrocopy VHDEFHETKGESDIIYAFHGNHL*NFHSIIHNSLHCHLIKTSLFGEVTCLTSDISPVI<FYSPHVMGWLH

Parental  SLLGPILSCVALCEIIDHPDVKCQTKKKDSEEIDRKRARAKHSEGGDVPPKY
          S.LG.ILSC..LCEI....DVKCQTKKKDSEEI..KR.R.KHSEGGD.PP.Y
Retrocopy SVLGHILSCLTLCEITNYSDVKCQTKKKDSEEIN*KRVRSKHSEGGDSPPEY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_672 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_672 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000004437	1 retrocopy	retro_acar_148,
Macropus eugenii	ENSMEUG00000001881	1 retrocopy	retro_meug_672 ,