RetrogeneDB ID: retro_meug_693

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold162889:10..490(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KCTD1
• Ensembl ID: ENSMEUG00000003335
• Aliases: None
• Description: potassium channel tetramerization domain containing 1 [Source:HGNC Symbol;Acc:18249]

Sequence

>retro_meug_693
ATGTCAAGACCTCTGATCACTAGATTGTCTGCATCTCTATTGAACAATCAAAGCATTCCTACTCCAACACAGTTCACAAA
ATCCAATGCATCCATCCAGATTGATGTGGGTGGTCACATGTATACCATCAGCTTATCCACACTCACCAAATACCCTGAAT
CAAGGATTGGATGACTTTTTGATGACAAGGAGTTAATTGTTTTGGACAGTCTCAAACAGTATTATTTCCCTGACAGAGAT
GGACAGATGTTCTGATACATACTAAATTTTCTAGGAACATCAAAACAACTCATTTTGAATGATTTTAATGACAACATTTT
ATTGTATGAAGAGGCAAAGTATTTTCAGCTTCAACTCATGTTAATGGAGATGGAAAGATGGAAATAGGATCAGGAAAATG
GTCACTTTTCTAGATCCTGTTAGTGTTTAGTGACATGAGTTGCCCCAGACCTGGGAGAGAGGATTATACTCAGTGGTGAT

Alignment

ORF - retro_meug_693 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.75 %
• Parental protein coverage: 62.26 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDS
          MSRPLITR..AS.LNNQ.IPTP.Q.TKSNA...IDVGGHMYT.SL.TLTKYPESRIG.LFD..E.IVLDS
Retrocopy MSRPLITRLSASLLNNQSIPTPTQFTKSNASIQIDVGGHMYTISLSTLTKYPESRIG*LFDDKELIVLDS

Parental  LKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLMEMERWKQDRENGRFSRPC
          LKQ.YF.DRDGQMF.YILNFL.TSK.LI..DF.D..LLYEEAKYFQLQ.MLMEMERWK.D.ENG.FSR.C
Retrocopy LKQYYFPDRDGQMF*YILNFLGTSKQLILNDFNDNILLYEEAKYFQLQLMLMEMERWK*DQENGHFSRSC

Parental  ECLVVRVAPDLGERITLSGD
          .CLV..VAPDLGERI.LSGD
Retrocopy *CLVT*VAPDLGERIILSGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_693 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_693 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000003335	1 retrocopy	retro_meug_693 ,
Macropus eugenii	ENSMEUG00000016009	1 retrocopy	retro_meug_1132,