RetrogeneDB ID: retro_meug_7

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold400778:655..2080(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000002828
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000003670
• Aliases: None
• Description: None

Sequence

>retro_meug_7
ATGCCTGCCCTCACTGAATTGTTTAGTCATATTGATAAACACCAGGATCAGTACATAAAGAAGCTTGCAGAATGGGTGGC
AATCCAGAGCATTTCTGCACGGCCAGAGAAAAGAGAAGAAATCAATCGAATGATGGAAGTTGCCGCTGCAAACATAAGAC
AACTCGGTGGCACCACTGAGCTGATAGACATTGGAAAACAAAAGCTCCATGACGGCTCAGAAATACCTCTTCCTCCTATT
TTACTTGGCACACTGGGCTCAGATCCCCTAAAGAAAACTGTGTGTGTCTATGGACATCTGGATGTACAACCAGCAGCTCT
GGAGGATGGCTGGGACAGTGAGCCCTTCACATTGGTAGAAAGAGATGGAAAACTCTATGGAAGAGGTGCAACTGATGACA
AGGGACCAGTACTTGGCTGGCTAAATGCCCTGGAAGCTTTTCAGCAAATAAATCAGGATATCCCTGTCAATGTCAAATTT
TGTCTAGAAGGCATGGAGGAATCTGGTTCTGAAGGACTGGATGACTTGATTTTCTCCAAGAAAGATACTTTCTTCAAAGA
TGTGGATTATGTTTGTATCTCTGACAACTACTGGCTGGGGAAAAAGAAGCCCTGTATTACGTATGGCCTCAGAGGAATTT
GCTATTTTTTTATAGAGGTGGAATGCTCCGACAAAGACCTTCGTTCTGGTGTGTATGGTGGTTCAGTGCATGAAGCCATG
TCAGATCTCATTACTCTGATGGGCTGCTTGGTGGACAGAACGGGACACATTCTCATCCCTGGTATTAATGAAGCAGTGGC
TCCTGTTACTGATGAGGAGCTCTTACAATATGAAAAGATTGACTTTGACTTGGAAGAATATGCAAAAGATGTAGGAGCAG
AGACACTTCTACATGATTCAAAGGAAAAAATCTTAATGCACAGATGGAGATATCCATCCCTGTCTCTCCATGGAATTGAA
GGAGCCTTCTCTGGAACAGGAGCTAAAACTGTGATTCCTAGGAAAGTGATTGGCAAATTCTCAATAAGATTGGTGCCAGA
TATGGTACCTGAGGTTGTTGAAAAACAGGTTATAAGTTACTTGAATACAAAGTTTGCTGAACTGAAGAGCCCCAACAAAT
TCAAAGCTTACATGGGCCATGGTGGAAAACCCTGGGTGTCCGACTTCAATCATCCTCATTACCTGGCTGGGAGAAAAGCC
CTAAAAAGAGTTTTTGGTGTTGAACCAGACTTGACCAGAGAAGGGGGCAGTATTCCTGTGACCTTGACCTTCCAAGAGGC
CACAGGTAAAAATGTAATGCTGCTGCCTGTCGGATCAGCAGATGATGGTGCTCATTCACAAAATGAAAAACTCAACAGGC
ATAACTACATAGAAGGGACCAAAATGCTGGGTGCATACCTTTATGAAGTGTCTCAACTGGACTGA

Alignment

ORF - retro_meug_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.38 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DIPVNVKFCLEGMEESGSEGLDDLIFSKKDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVEC
          DIPVNVKFCLEGMEESGSEGLDDLIFSKKDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVEC
Retrocopy DIPVNVKFCLEGMEESGSEGLDDLIFSKKDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVEC

Parental  SDKDLHSGVYGGSVHEAMSDLITLMGCLVDRTGHILIPGINEAVAPVTDEELLQYEKIDFDLEEYAKDVG
          SDKDL.SGVYGGSVHEAMSDLITLMGCLVDRTGHILIPGINEAVAPVTDEELLQYEKIDFDLEEYAKDVG
Retrocopy SDKDLRSGVYGGSVHEAMSDLITLMGCLVDRTGHILIPGINEAVAPVTDEELLQYEKIDFDLEEYAKDVG

Parental  AETLLHDSKEKILMHRWRYPSLSLHGIEGAFSGTGAKTVIPRKVIGKFSIRLVPDMVPEVVEKQVISYLN
          AETLLHDSKEKILMHRWRYPSLSLHGIEGAFSGTGAKTVIPRKVIGKFSIRLVPDMVPEVVEKQVISYLN
Retrocopy AETLLHDSKEKILMHRWRYPSLSLHGIEGAFSGTGAKTVIPRKVIGKFSIRLVPDMVPEVVEKQVISYLN

Parental  TKFAELKSPNKFKAYMGHGGKPWVSDFNHPHYLAGRKALKRVFGVEPD-TREGGSIPVTLTFQEATGKNV
          TKFAELKSPNKFKAYMGHGGKPWVSDFNHPHYLAGRKALKRVFGVEPD.TREGGSIPVTLTFQEATGKNV
Retrocopy TKFAELKSPNKFKAYMGHGGKPWVSDFNHPHYLAGRKALKRVFGVEPDLTREGGSIPVTLTFQEATGKNV

Parental  MLLPVGSADDGAHSQNEKLNRHNYIEGTKMLGAYLYEVSQLD
          MLLPVGSADDGAHSQNEKLNRHNYIEGTKMLGAYLYEVSQLD
Retrocopy MLLPVGSADDGAHSQNEKLNRHNYIEGTKMLGAYLYEVSQLD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

1 EST(s) were mapped to retro_meug_7 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
FY726257	585	1138	100	553	0	553

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_7 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000003670	1 retrocopy	retro_meug_7 ,