RetrogeneDB ID: retro_meug_704

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold16446:15525..16060(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS28
• Ensembl ID: ENSMEUG00000007676
• Aliases: None
• Description: mitochondrial ribosomal protein S28 [Source:HGNC Symbol;Acc:14513]

Sequence

>retro_meug_704
ATGGCAGCGCTGGGCTGGAGTCGTGTTGGCCGCCCAGGGCCGTTTCTGGCGACCTCATCTCTCAGCTCCTTGATGGTACA
GTGTCAATGCCAGCACAGAGAGTGATAGAGTCCTTCTCCAAAGGAACCGGGAAAACAGTTGGGCGGCTTCGCCAGCGCTT
TGGAACGCCATTCGAAGTTGCAGCAGGAGGCGGAGGCCCTGGCAGGACTCTCCAAAGGATGTGAAATCCTTTGCACCCCT
GCTGAGACATTCTCCTCTAATTCAGATGGGACCTGCCAAAGATAAAATCATCTTTGGACAAATCTTCCACGTTGTGGAAA
ATGACCTTTATATAGATTTCGGTGGCAAGTTTCATTGTGTATGCAAAAGACCAGAATCAGATGGAGAAAAATACCAGAAA
GGAACCAGAGTACGCCTGCGACTGTTGGGTCTTGAACTCACATCCACATTCCTGGGAGCAAAAACAGATATGACTTTACT
AGAAGCTGACACTGTACTCTTGGGTCTCCAGGAGAGTAGGGACACCAAGTCAAAG

Alignment

ORF - retro_meug_704 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.56 %
• Parental protein coverage: 98.89 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAALWRSRVVAAQGRFSRLSLSCSMLQCRGTESESESPSLKEPGKRLGGFASALERHSKLQQEAE-PRQV
          MAAL..SRV..........SLS..M.QC.....E..SPS.KEPGK.LGGFASALERHSKLQQEAE.P.Q.
Retrocopy MAALGWSRVGRPGPFLATSSLSSLMVQCQCQHRE**SPSPKEPGKQLGGFASALERHSKLQQEAE>PWQ-

Parental  DSPKDVKSFASLLRHSPLIQMGPAKDKIVFGQIFHVVENDLYIDFGGKFHCVC-RPESDGEKYQKGTRVR
          DSPKDVKSFA.LLRHSPLIQMGPAKDKI.FGQIFHVVENDLYIDFGGKFHCVC.RPESDGEKYQKGTRVR
Retrocopy DSPKDVKSFAPLLRHSPLIQMGPAKDKIIFGQIFHVVENDLYIDFGGKFHCVCKRPESDGEKYQKGTRVR

Parental  LRLLDLELTSRFLGAKTDTTLLEADAVLLGIQESRDTKSK
          LRLL.LELTS.FLGAKTD.TLLEAD.VLLG.QESRDTKSK
Retrocopy LRLLGLELTSTFLGAKTDMTLLEADTVLLGLQESRDTKSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_704 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_704 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007676	1 retrocopy	retro_meug_704 ,
Tupaia belangeri	ENSTBEG00000010380	2 retrocopies	retro_tbel_3997, retro_tbel_4403,