RetrogeneDB ID: retro_meug_72

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_1332:3848..4621(+)
• Located in intron of: ENSMEUG00000007831

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CYP2S1
• Ensembl ID: ENSMEUG00000007147
• Aliases: None
• Description: cytochrome P450, family 2, subfamily S, polypeptide 1 [Source:HGNC Symbol;Acc:15654]

Sequence

>retro_meug_72
CTTCGATATCTCTCAGCTCCTCATAACCAGCTCACAGACCACCTAAGCACCTTGGCAACCTTTGTCTCAAGCCAGATTCA
GCAGCACCAGGAGAAACTGGATCTTTAGGCCCCTGTCCGAGACTTTATGAATGACTTCCTGCTCAAAATGAGCCAGGAAG
AAAAAGACTCAGGGTCTGGCCACACGGATTTCCTGCTAACCGCTGTGAACCTGCTCTTTGGGGGGACGGTGACAGTCAGT
GCCACACTCAAATATGCTTTCCTGCTCCTGCTTAAATATCCAGAGGTCCAAGATCGAATCCAGGAGAGCTGAGCCGAGAA
TTCGGGCGTGAGCGGGCCCCCAGCCTGGCAGACCGTGGGTGTCTCCCCTACACTGATGCCTTCCTGTGTGAGGTTCAGAG
GTTCCTGGCCCTCCTCCCTATGGGGGTTCCCAGTGCCCTCACAAAGCCCACATCATTCCAGGGCTATGACCTGCCCCAGG
GAATTGAAGTCTTCCCACTCCTGGGGTCTGTTCTCCATGACCCAGCATTCTTTGAGCGGCCAGAGGAATTCAGCCTGAGC
CGTTTCCTGGATGCTGATGGCTGATTCAAGAAAAACGAGGCCTTCCTGCCTTTCTCCTTAGGGAAGCGAATCTGCCTTGG
GGAAGGCCTGGCCCGCACCGAACTCTTCCTCTTTTTTGCCACCATCCTCCAGAATTTCTCCCTGGAGAGACCATCCCCAC
CAGGGGCTCTGAGCCTCCAGCCAGCTACCAGTGGCTTCGCCAACATTCCTCCA

Alignment

ORF - retro_meug_72 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.89 %
• Parental protein coverage: 56.95 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LYYLSGPHNRLTDHLSTLATFVSSQIQQHQEKLDLQAPVQDFVDDFLLKMSQEEKDSGSGHTDFLLTAVN
          L.YLS.PHN.LTDHLSTLATFVSSQIQQHQEKLDL.APV.DF..DFLLKMSQEEKDSGSGHTDFLLTAVN
Retrocopy LRYLSAPHNQLTDHLSTLATFVSSQIQQHQEKLDL*APVRDFMNDFLLKMSQEEKDSGSGHTDFLLTAVN

Parental  LLFGGTVTVSATLKYAFLLLLKYPEVQDRIQE-ELSRELGRERAPSLADRGHLPYTDAFLHEVQRFLALL
          LLFGGTVTVSATLKYAFLLLLKYPEVQDRIQE.ELSRE.GRERAPSLADRG.LPYTDAFL.EVQRFLALL
Retrocopy LLFGGTVTVSATLKYAFLLLLKYPEVQDRIQE<ELSREFGRERAPSLADRGCLPYTDAFLCEVQRFLALL

Parental  PMGVPRALTKPISFRGYDLPQGIEVFPLLGSVLHDPAFFERPEEFNPSRFLDADGRFKKNEAFLPFSLGK
          PMGVP.ALTKP.SF.GYDLPQGIEVFPLLGSVLHDPAFFERPEEF..SRFLDADG.FKKNEAFLPFSLGK
Retrocopy PMGVPSALTKPTSFQGYDLPQGIEVFPLLGSVLHDPAFFERPEEFSLSRFLDADG*FKKNEAFLPFSLGK

Parental  RICLGEGLARTELFLFFTTILQNFSLESPSPPEALSLQPAISGFANIPP
          RICLGEGLARTELFLFF.TILQNFSLE.PSPP.ALSLQPA.SGFANIPP
Retrocopy RICLGEGLARTELFLFFATILQNFSLERPSPPGALSLQPATSGFANIPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_72 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_72 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007147	1 retrocopy	retro_meug_72 ,