RetrogeneDB ID: | retro_meug_754 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold17792:16023..17219(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TBL2 | ||
| Ensembl ID: | ENSMEUG00000013727 | ||
| Aliases: | None | ||
| Description: | transducin (beta)-like 2 [Source:HGNC Symbol;Acc:11586] |
Retrocopy-Parental alignment summary:
>retro_meug_754
AAATCCCATGGAGTTTTATTCCATAAATGCTAAGTGCACAAACAACAATAGCAAAGATGCCATAAGTAAAAGTCTCACAA
ACACATTTTTGTTCATGCTTTCCTGGCAGCTATGTTGAAGAAGCATGGTGGGACTGTCGCTAGCATGGACTTCAGCAACA
ATAGAAATATGTGTCAACATGTGTCAATGACCAAACCATTCACACCTAGAACACCAAGGATTTTTTGCAGCAGGAACATT
AAAGCCTTCAAGTTAATATGAAACTGAAGCATACCACCTTGGTGCATGTCAGCCTTGAGTGCAGAGTCTTAATCACCTGG
CTGGCTAATGCTGACACCATCCATATTTTCAAAATGAAGAAGAAAGAAGATGAAAGCATTATTTTTCAGCCTATTTCAGA
AGACTTGCTTAACAGGCACAAGGCACCACTCATCAATACTGGCATTGCTGAGACAGGAAAGTGTATCATGTCTGTCTTCA
GTGACACTATAATCATCATCTGGACCCTAAAGGTGGAAGTGCTGTCCATCATTAATATGCAACAAATGAACAACACTTAC
ATGGTCATCTCTCCTTATAGCAGATTTGCAGGTTCATGGATTTTCACTCTAGATGTTAAAGTTTGGGTCATTTGCATTAG
CAAAAGCAGGCAATTCAAGGAAGTGACATGTACCTTTGAAGTGAAGGGTCATGATGCTGGTATCCACATCTTAGCTTTCT
CCAGTGATTCCTGCCAGATGGCAACTGTTTCCAAAGATCAGACATGGAAGTTGTGGGACACAGATATAGAGTATAAGCAT
CAACAAGAGCTCTGTCTCCTGCTGACAGGGCTGTACAATGAGGTAGCCACCATGCTTTGCATCCTTGCACTCTCTCCAGA
TGCTCAGGTCTTGGCTCTGGTCAGCAGCTACAACATATGGCTTTACAACACAAATTAAGATAAAGAAGAAGAGACTTTTA
ACAAACTCAATGGTGGATGCATGGCCAAAATAACCTTTGATACCACAGATCAGTTCCTAGCTTCCTGTAGAGACAGGGTG
GTGAGGATCTTTCAAAATAACACTGATCAGAGGGTCAGAGTGGAAGAGATATGGAGGCTTTTCAAATTGGCCACCACTAA
AACTATGCAACAGAAAGTGAATCAGCAGTTTTTGCAAGTCCAGGCTACTTTCAAAAGGCAGGGGCCCATGAAGGTC
ORF - retro_meug_754 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 64.75 % |
| Parental protein coverage: | 99.75 % |
| Number of stop codons detected: | 6 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | KTNGFSSIKCQVHKKQKQRHQKEKPHQHIFVHALLASTLKSHSGNITSMDFSNNG-KYLATCADDRTIHI |
| K..G....KC.VHK.Q.QR..K.K.H.HIFVHA.LA..LK.H.G...SMDFSNN..KY..TC..D.TIH. | |
| Retrocopy | KSHGVLFHKC*VHKQQ*QRCHK*KSHKHIFVHAFLAAMLKKHGGTVASMDFSNNR<KYVSTCVNDQTIHT |
| Parental | WSTKDFLQREHRSLRVNVKLDHATLVRFSPDCRALITWLANGDTIRVFKMKKKEDGNSTFQPMAEDFPKK |
| ..TKDFLQ.EH.SL.VN.KL.H.TLV..S..CR.LITWLAN.DTI..FKMKKKED....FQP..ED.... | |
| Retrocopy | *NTKDFLQQEH*SLQVNMKLKHTTLVHVSLECRVLITWLANADTIHIFKMKKKEDESIIFQPISEDLLNR |
| Parental | HKAPVINIGIAETGKFIMSVSSDTTIIIWTLKGEVLSIINTNQMNNTYAVISHCSRFVGSCGFTPDAKVW |
| HKAP.IN.GIAETGK.IMSV.SDT.IIIWTLK.EVLSIIN..QMNNTY.VIS..SRF.GS..FT.D.KVW | |
| Retrocopy | HKAPLINTGIAETGKCIMSVFSDTIIIIWTLKVEVLSIINMQQMNNTYMVISPYSRFAGSWIFTLDVKVW |
| Parental | EVCFSKNGQFREVTRAFELKGHTAGIHFLAFSNDSCRMATVSKDGTWKFWAIDVEYKQQQDPYLLLTGTY |
| ..C.SK..QF.EVT..FE.KGH.AGIH.LAFS.DSC.MATVSKD.TWK.W..D.EYK.QQ...LLLTG.Y | |
| Retrocopy | VICISKSRQFKEVTCTFEVKGHDAGIHILAFSSDSCQMATVSKDQTWKLWDTDIEYKHQQELCLLLTGLY |
| Parental | QEAASMPCILALSPDAQVLALASSNNIRLFNTKRGEEEENFTKIHGGQVAEMAFDTTGQFLASCGDRMVR |
| .E.A.M.CILALSPDAQVLAL.SS.NI.L.NT....EEE.F.K..GG..A...FDTT.QFLASC.DR.VR | |
| Retrocopy | NEVATMLCILALSPDAQVLALVSSYNIWLYNTN*DKEEETFNKLNGGCMAKITFDTTDQFLASCRDRVVR |
| Parental | IFHNTTGQRAIVEEIRGLLKRAPTETTRQRLNQQLIQAQATLKRLGAVKV |
| IF.N.T.QR..VEEI..L.K.A.T.T..Q..NQQ..Q.QAT.KR.G..KV | |
| Retrocopy | IFQNNTDQRVRVEEIWRLFKLATTKTMQQKVNQQFLQVQATFKRQGPMKV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_754 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_754 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000013727 | 1 retrocopy |
retro_meug_754 ,
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