RetrogeneDB ID: retro_meug_853

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold20770:16155..16655(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HINT3
• Ensembl ID: ENSMEUG00000007627
• Aliases: None
• Description: histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:18468]

Sequence

>retro_meug_853
ATGGCCAAGGATCAGGGGTCCCCCAGCAGTGATCTGTCATCTTCTCCACCCACTGAGAGGCAGCCCAACATGGAGGAAGG
TACGGCTGCCTGTTTGTCCAACAGAGATTATGGCTCCAGGTATTTGTTCTGTTGGATTGCTCCCCTAGATTGGGAAGAGT
CCAGTACCTAGTTGTTGCCCTACAAGCCTGAAGACCTCATTTGCTTCCAAGATATCAAACCTGGGGCTCCATATCATTAT
GCTGTGGTGCCAAAGAAGCACACTGAAAACTGCAAAACCCTAAAGAAAGAAGATTTCTACTTAGTGGAGAAAATGGGTAG
TATTGGAGAAAGTGTTCTTCAGCAGAAAAATGTCACTGACCTGAATGATGGAGAATGGATTTCCATTGGCCTCTATTCTT
CTCCACAGCCTATTTGCACTTTCATGTCCTGGCACCAGTCAGCCAACTGGGCTTCTCATCTAGCCTGGTTTATAGACTCA
GTTCATACTGGTTTGTCACA

Alignment

ORF - retro_meug_853 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.9 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAGEQGSPSSLATFSPP--RAAPAREGAAASPAGEGYDPKCVFCRIARR--EEPGTQLVPCEPEDLVCFQ
          MA..QGSPSS....SPP..R.....EG.AA......Y.....FC.IA....EE..T.L.P..PEDL.CFQ
Retrocopy MAKDQGSPSSDLSSSPPTERQPNMEEGTAACLSNRDYGSRYLFCWIAPLDWEESST*LLPYKPEDLICFQ

Parental  DIRPGAPHHYLVVPKKHIGNCKTLKKEDVPLVEKMVTAGKTVLQQKNVTDLTD-VRMGFHWPPFCSIAHL
          DI.PGAP.HY.VVPKKH..NCKTLKKED..LVEKM...G..VLQQKNVTDL.D..RM.FHWP.F.S.A.L
Retrocopy DIKPGAPYHYAVVPKKHTENCKTLKKEDFYLVEKMGSIGESVLQQKNVTDLND<WRMDFHWPLFFSTAYL

Parental  HLHVLAPASQLGFLSRLVYRPNSYWFIT
          H.HVLAP.SQLGF.S.LVYR..SYWF.T
Retrocopy HFHVLAPVSQLGFSSSLVYRLSSYWFVT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_853 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_853 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001830	1 retrocopy	retro_chof_38,
Callithrix jacchus	ENSCJAG00000003710	1 retrocopy	retro_cjac_3868,
Cavia porcellus	ENSCPOG00000021856	1 retrocopy	retro_cpor_674,
Echinops telfairi	ENSETEG00000007350	1 retrocopy	retro_etel_1567,
Macropus eugenii	ENSMEUG00000007627	1 retrocopy	retro_meug_853 ,
Mus musculus	ENSMUSG00000019791	1 retrocopy	retro_mmus_1387,