RetrogeneDB ID: retro_meug_86

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_1927:9086..9629(+)
• Located in intron of: ENSMEUG00000007549

Retrocopy information

• Ensembl ID: ENSMEUG00000007572
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BFAR
• Ensembl ID: ENSMEUG00000007566
• Aliases: None
• Description: bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:17613]

Sequence

>retro_meug_86
GATGCTATTGAAAAGTTATTTCCTGATGCCATCAAACTGAGATCAGAAGACATTGAGCAGAACGTTGACATAGTCCATAG
TCTTACTGCCTTTCATAAATATGGGAATGATCAGATTTCTGTAGCTCCAAATACAGGGCGAGCAAATCCTCAAAGAGGAG
GGGGATTTTTTTCTGGAGTATTAACAGCTTTAACTGGTGTTGCAGTAGTTCTGCTTGTATATCACTGGAGCAGTCGAGAA
TCAGAGCATGACCTGCTCGTTCACAAATCTGTTGCAAAATGGACAGCTGAAGAAGTCATCTTTTGGCTAGAGCAGCTGGG
CCCTTGGGCCTCTCTGTATAGAGAAAGATTTTTATCTGAAAGAGTTAATGGCAGATTGCTTTTAACATTGACAGATGAAG
ACTTTTCAAAGGCTCCATATAACATAGAGAATAGTAGCCACAGAAAAGCCATCATAATGGAACTGGAGCGTGTCAAAACT
TTAGGAGTAAAACCCCCACAGAATCTTTGGGAATACAAGGCCATCAACCCAGGCAAGTCATTA

Alignment

ORF - retro_meug_86 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.34 %
• Parental protein coverage: 61.36 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DAIEKLFPDAIKLRLEDIEQNADIVHSLTAFHKYGNDQISVAPNTGRANPQRGGGFFSGVLTALTGVAVV
          DAIEKLFPDAIKLR.EDIEQN.DIVHSLTAFHKYGNDQISVAPNTGRANPQRGGGFFSGVLTALTGVAVV
Retrocopy DAIEKLFPDAIKLRSEDIEQNVDIVHSLTAFHKYGNDQISVAPNTGRANPQRGGGFFSGVLTALTGVAVV

Parental  LLVYHWSSRESEHDLLVHKSVAKWTAEEVIFWLEQLGPWASLYRERFLSERVNGRLLLTLTDEDFSKAPY
          LLVYHWSSRESEHDLLVHKSVAKWTAEEVIFWLEQLGPWASLYRERFLSERVNGRLLLTLTDEDFSKAPY
Retrocopy LLVYHWSSRESEHDLLVHKSVAKWTAEEVIFWLEQLGPWASLYRERFLSERVNGRLLLTLTDEDFSKAPY

Parental  NIENSSHRKAIIMELERVKTLGVKPPQNLWEYKAVNPGKSL
          NIENSSHRKAIIMELERVKTLGVKPPQNLWEYKA.NPGKSL
Retrocopy NIENSSHRKAIIMELERVKTLGVKPPQNLWEYKAINPGKSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_86 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_86 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000592	1 retrocopy	retro_chof_2303,
Macropus eugenii	ENSMEUG00000007566	1 retrocopy	retro_meug_86 ,
Myotis lucifugus	ENSMLUG00000005423	1 retrocopy	retro_mluc_1731,