RetrogeneDB ID: | retro_meug_863 | ||
Retrocopy location | Organism: | Wallaby (Macropus eugenii) | |
| Coordinates: | Scaffold21098:4250..4697(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AVEN | ||
| Ensembl ID: | ENSMEUG00000005377 | ||
| Aliases: | None | ||
| Description: | apoptosis, caspase activation inhibitor [Source:HGNC Symbol;Acc:13509] |
Retrocopy-Parental alignment summary:
>retro_meug_863
CTTAGATCTGCAGATGACTCCCCACAGATTCACTTTATGGAGGAAAAAAGAGTAGGATATCAAAGTTTCATCTCCTAAAG
AGATCTTAGCCCTCTGTAGACTGTGTGGAATTCATCGGAGCCCTTCAAGAGCTATCTCTATCATTCTAGCTAAATGTGGC
TGCTGTGTTAATCCAGGCTACAGCTCCTCCAGAGTTGCCACAAATGAAACCAAAGGAAATGGAAGATGGCTGGGTTATGC
AGATAGGATAGCCCTTAGATTCAATCTCTGATGTGAGCTCTAATGCTGCCAGCCAGCCAGAGCCCACAGGTAAAGAAGGG
AGTTGGGCCATGTTTTTGGAGGCTTGTCAGAAAAATCACTCTCCCATTGTAGCCAACTGCGTACCATCTGGATGAAGAAT
TAGATCTGCTACTAAATTTAGATGCTCCTATAAAAGAGGAGGATAAC
ORF - retro_meug_863 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 53.9 % |
| Parental protein coverage: | 57.03 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | LSSAGDSFSQFRFAEEK-EWDTEASSPKQSALY-VTCKSLVRTLQVLLLSCEINVAADIAQATASL-FPQ |
| L.SA.DS..Q..F.EEK.E.D...SSPK......V.C......LQ.L.LS...NVAA...QATA....PQ | |
| Retrocopy | LRSADDS-PQIHFMEEK>E*DIKVSSPKEILAL>VDCVEFIGALQELSLSF*LNVAAVLIQATAPPELPQ |
| Parental | MKSKKMEDGKGVSMQMRWPLGPGSDVISDAANRPMPMGKNGPRPRSLEGFQK-ITSPRQQTVSHLDEELD |
| MK.K.MEDG....MQ...PL...SDV.S.AA..P.P.GK.G.....LE..QK.IT.P...T..HLDEELD | |
| Retrocopy | MKPKEMEDGW--VMQIG*PLDSISDVSSNAASQPEPTGKEGSWAMFLEACQK>ITLPL*PTAYHLDEELD |
| Parental | LLLNLDAPVKEEDN |
| LLLNLDAP.KEEDN | |
| Retrocopy | LLLNLDAPIKEEDN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_863 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_863 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Macropus eugenii | ENSMEUG00000005377 | 1 retrocopy |
retro_meug_863 ,
|