RetrogeneDB ID: retro_meug_877

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2177:7975..8890(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PANK1
• Ensembl ID: ENSMEUG00000014668
• Aliases: None
• Description: pantothenate kinase 1 [Source:HGNC Symbol;Acc:8598]

Sequence

>retro_meug_877
AAGCCTTCTTTCCCATGGTTTGGCATGGACATAGGAGGCACTCTTGTGAAACTTGGCTACTTTGAACCCATTGATATCAC
AGCAGAGGAGGAGCAAGAAGAAATTGAAAATTTAAAAAGTATCCGGAAATATCTGACTTCTAATGTAGCCTATGGGTTAA
TTGGAGTTAGGGATGTTCATCTCGAACTTAAAGATTTGACACTTTTTGGGAGAAGAGGGAACTTGCTCTTTATCAGATTT
CCAACCCATGACCTGCCTACTTTTATCCAAATGGGGAGAGATAAAAACTTCTCAACGTTACACAAGGTACTATGTGCTAC
TGGAGGTGATGCTTACAAGTTTGAAAAAGATTTTCGCACTACTGGAAACCTCCAGTTGCACAAACTGGATGAACTTGACT
GTCTTGTAAAGGGCTTGCTATATATAGATTCTGTCAGTTTTAATGGGCAGGCAGAATGCTATTACTTTGGCAATGCCTCA
GAAGCTGAAAGATGCCAAAAGACGCCTTTTACCTTAGATGACCCATATTCACTACTGGTCGTGAACATTGGTTCTGGAGT
TCGTATTTTAGCTGTCCATTCCAAAGACAACTATAAGGGAGTTACTAGAACAAGCCTGGGAGGTGGTACATTTCTGGGCT
TATGCAGTTTACTGACTGGCTGTGAAAGTTTTAAAGAAGCTCTTGAAATGGCTTCCAAAGGTGACAGCACCCATGCTGAT
AAATTGGTCTGTGATATTTATGGAGGAGATTATGAAAGATTTGGCTTGCCAGGGTGGGCTGTAGCATCTAGTTTTGGAAA
CATGATTTATAAGGAGAAGGGAGAATCCGTTAGTAAAGAAGATCTAGCGAGAACTACTTTAGTTACTGGGACCAATAACA
TTGGTTCTATAGCAAGAAAGTGTGCTGATAATGAG

Alignment

ORF - retro_meug_877 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.75 %
• Parental protein coverage: 53.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RPPFPWFGMDIGGTLVKLVYFEPKDITAEEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCG
          .P.FPWFGMDIGGTLVKL.YFEP.DITAEEEQEE.ENLKSIRKYLTSN.AYG..G.RDVHLELK.LT..G
Retrocopy KPSFPWFGMDIGGTLVKLGYFEPIDITAEEEQEEIENLKSIRKYLTSNVAYGLIGVRDVHLELKDLTLFG

Parental  RTGNLHFIRFPSCAMHKFIQMGSEKNFSSLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLL
          R.GNL.FIRFP......FIQMG..KNFS.LH..LCATGG.A.KFE.DFR....LQLHKLDELDCL..GLL
Retrocopy RRGNLLFIRFPTHDLPTFIQMGRDKNFSTLHKVLCATGGDAYKFEKDFRTTGNLQLHKLDELDCLVKGLL

Parental  YVDSIGFNGKPECYYFEKPTDPEQCQKKPYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGT
          Y.DS..FNG..ECYYF......E.CQK.P..LD.PY..L.VN.GSGV.ILAV.SKDNYK.VT.TSLGGGT
Retrocopy YIDSVSFNGQAECYYFGNASEAERCQKTPFTLDDPYSLLVVNIGSGVRILAVHSKDNYKGVTRTSLGGGT

Parental  FLGLCCLLTGCETFEEALEMAAKGDSTNVDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRDAISKE
          FLGLC.LLTGCE.F.EALEMA.KGDST..DKLV.DIYGGDYERFGL.G.AVASSFGNM..KEK....SKE
Retrocopy FLGLCSLLTGCESFKEALEMASKGDSTHADKLVCDIYGGDYERFGLPGWAVASSFGNMIYKEKGESVSKE

Parental  DLARATLVTITNNIGSIARMCAQNE
          DLAR.TLVT.TNNIGSIAR.CA.NE
Retrocopy DLARTTLVTGTNNIGSIARKCADNE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_877 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_877 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000014668	1 retrocopy	retro_meug_877 ,
Myotis lucifugus	ENSMLUG00000002554	1 retrocopy	retro_mluc_788,