RetrogeneDB ID: retro_meug_991

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold25311:7397..9060(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPI
• Ensembl ID: ENSMEUG00000010190
• Aliases: None
• Description: glucose-6-phosphate isomerase [Source:HGNC Symbol;Acc:4458]

Sequence

>retro_meug_991
ATGACCGCGCTCAGCAAGGACCCGAACTTCCAGAAGCTAGTCCAGTGGCACCGCCAGCACGCGGCCGAGCTCAACCTCCG
GCGCCTTTTCGAGGCTGACCACGACCGCTTCAACCGCTTCAGCCTGAATCTCGACACCAAAAATGGACACATCCTTGTGG
ATTATTCCAAGAACCTCATTACCGAAGATGTGATGAAGATGCTTATTGAGCTGGCTAAGTCTCGAGGGGTGGAAGATGCT
CGGGCACAAATGTTCAAGGGAACTAAGATCAATTTCACTGAGGATCGGGCTGTGCTCCACGTGGCACTGCGGAATCGCTC
TAACACCCCCATGCTAGTGGACAGCAAGGACGTGGTACCAGAGGTGAACAAAGTGCTGGAGAAAATGAAGGCATTCTGTC
AGCGTGTCCGTGGTGTAGAATGGAAGGGCTACACAGGAAAGACGATTACAGATGTGATCAACATTGGCATTGGAGGTTCT
GACTTGGGTCCTCTGATGGTGACAGAAGCCCTGAAGCCCTACTCCAAAGGAGGTCCTCAGTGTCTGGTTTGTCTCCAATA
TTGATGGTACACATATTGCCAAGACCCTTGCTGAACTTAACCCGGAAACCTCTCTCTTCATCATTGCTTCAAAGACATTT
ACCACCCAGGAGACCATCACCAATGCAGAGACAGCCAAGGAGTGGTTCCTTCATTCAGCAAAGGATCCTTCAGCTGTGGC
AAAGCACTTTGTGGCCTTGTCTACCAATGCACCGAAAGTTCAAGATTTTGGAATCCACACTCAAAATATGTTTGAATTTT
GGGATTGGGTTGGTGGACGTTACTCGTTGTGGTCAGCTATCGGTCTCTCCATTGCCCTGCATGTTGGTTTTGATAACTTT
GAGCAGCTGTTATCGGGGGCTCACTGGATGGACAATCACTTCCTCACCACCCCACTGGAGAAGAATGCCCCTGTGCTTCT
TGCCATGCTAGGCATCTGGTACATTAACTGTTTTGGATGTGAGACTCAGGCCCTGCTGCTATATGACCAGTATATGCACC
GCTTTGCTGTCTACTTCCAGCAGGGTGACATGGAGTCTAATGGGAAGTACATCACCAAGTCAGGAGCTCAGGTTGACTAC
AGTACAGGCCTCATTGTGTGGGGAGAGCCAGGGACCAATGGACAACATGCTTTCTATCAGCTTATTCACCAGGGTACCCG
GATGATCCCTTGCGATTTTCTCATCCCTGTTCAGACGCAGAATCCAATCCGGAATGGCCTTCATCACAAGATTCTTCTAG
CCAACTTCCTGGCTCAGACTGAGGCCCTGATGAAAGGAAAGACAGTAGAGGAGGCACGCAAGGAGCTGGAGGCTGCAGGC
AAGAGTGGTGATGCCCTGAAGAAGCTGCTGCCTCATAAGGTCTTTGAGGGAAATCGTCCTACTAATTCCATTGTCTTCAC
AAAGCTCACTCCTTTCATTCTTGGAGCCTTGATTGCCATGTATGAGCACAAGATCTTCGTTCAGGGTGTTGTCTGGGATG
TCAACAGTTATGATCAGTGGGGAGTGGAACTGGGAAAGCAATTGGCCAAGAAAATTGAGCCTGAGTTGGACTCTGATAAA
CCTGTGACTTCTCATGATGCCTCTACCAATGGGTTGATCAGCTTTATCAAGCAGCACCGGGCC

Alignment

ORF - retro_meug_991 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.84 %
• Parental protein coverage: 99.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAALSKDPNFQKLVQWHRQHAAELNLRRLFEADHDRFNRFSVNLDTKNGHILVDYSKNLITEDVMKMLIE
          M.ALSKDPNFQKLVQWHRQHAAELNLRRLFEADHDRFNRFS.NLDTKNGHILVDYSKNLITEDVMKMLIE
Retrocopy MTALSKDPNFQKLVQWHRQHAAELNLRRLFEADHDRFNRFSLNLDTKNGHILVDYSKNLITEDVMKMLIE

Parental  LAKSRGVEDARAQMFKGTKINFTEDRAVLHVALRNRSNTPMLVDGKDVVPEVNKVLEKMKAFCQRVRGGE
          LAKSRGVEDARAQMFKGTKINFTEDRAVLHVALRNRSNTPMLVD.KDVVPEVNKVLEKMKAFCQRVRG.E
Retrocopy LAKSRGVEDARAQMFKGTKINFTEDRAVLHVALRNRSNTPMLVDSKDVVPEVNKVLEKMKAFCQRVRGVE

Parental  WKGYTGKMITDVINIGIGGSDLGPLMVTEALKPYSKGGPR-VWFVSNIDGTHIAKTLAELNPETSLFIIA
          WKGYTGK.ITDVINIGIGGSDLGPLMVTEALKPYSKGGP..VWFVSNIDGTHIAKTLAELNPETSLFIIA
Retrocopy WKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSKGGPQ>VWFVSNIDGTHIAKTLAELNPETSLFIIA

Parental  SKTFTTQETITNAETAKEWFLHSAKDPSAVAKHFVALSTNAPKVQDFGIDTQNMFEFWDWVGGRYSLWSA
          SKTFTTQETITNAETAKEWFLHSAKDPSAVAKHFVALSTNAPKVQDFGI.TQNMFEFWDWVGGRYSLWSA
Retrocopy SKTFTTQETITNAETAKEWFLHSAKDPSAVAKHFVALSTNAPKVQDFGIHTQNMFEFWDWVGGRYSLWSA

Parental  IGLSIALHVGFDNFEQLLSGAHWMDNHFLTTPLEKNAPVLLAMLGIWYINCFGCETQALLPYDQYMHRFA
          IGLSIALHVGFDNFEQLLSGAHWMDNHFLTTPLEKNAPVLLAMLGIWYINCFGCETQALL.YDQYMHRFA
Retrocopy IGLSIALHVGFDNFEQLLSGAHWMDNHFLTTPLEKNAPVLLAMLGIWYINCFGCETQALLLYDQYMHRFA

Parental  AYFQQGDMESNGKYITKSGARVDYSTGPIVWGEPGTNGQHAFYQLIHQGTRMIPCDFLIPVQTQNPIRNG
          .YFQQGDMESNGKYITKSGA.VDYSTG.IVWGEPGTNGQHAFYQLIHQGTRMIPCDFLIPVQTQNPIRNG
Retrocopy VYFQQGDMESNGKYITKSGAQVDYSTGLIVWGEPGTNGQHAFYQLIHQGTRMIPCDFLIPVQTQNPIRNG

Parental  LHHKILLANFLAQTEALMKGKTVEEARKELEAAGKSGDALKKLLPHKVFEGNRPTNSIVFTKLTPFILGA
          LHHKILLANFLAQTEALMKGKTVEEARKELEAAGKSGDALKKLLPHKVFEGNRPTNSIVFTKLTPFILGA
Retrocopy LHHKILLANFLAQTEALMKGKTVEEARKELEAAGKSGDALKKLLPHKVFEGNRPTNSIVFTKLTPFILGA

Parental  LIAMYEHKIFVQGVVWDVNSYDQWGVELGKQLAKKIEPELDSDKPVTSHDASTNGLISFIKQHRA
          LIAMYEHKIFVQGVVWDVNSYDQWGVELGKQLAKKIEPELDSDKPVTSHDASTNGLISFIKQHRA
Retrocopy LIAMYEHKIFVQGVVWDVNSYDQWGVELGKQLAKKIEPELDSDKPVTSHDASTNGLISFIKQHRA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_991 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_991 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000007303	3 retrocopies	retro_cfam_1715, retro_cfam_1935, retro_cfam_2101,
Cavia porcellus	ENSCPOG00000008562	1 retrocopy	retro_cpor_983,
Macropus eugenii	ENSMEUG00000010190	4 retrocopies	retro_meug_1022, retro_meug_1281, retro_meug_559, retro_meug_991 ,
Microcebus murinus	ENSMICG00000011620	1 retrocopy	retro_mmur_1496,
Myotis lucifugus	ENSMLUG00000003037	1 retrocopy	retro_mluc_444,
Macaca mulatta	ENSMMUG00000005880	1 retrocopy	retro_mmul_2086,
Mustela putorius furo	ENSMPUG00000007520	1 retrocopy	retro_mputfur_1370,
Mus musculus	ENSMUSG00000036427	1 retrocopy	retro_mmus_237,