RetrogeneDB ID: retro_mluc_109

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430843:11808..13323(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000014934
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000027816
• Aliases: None
• Description: None

Sequence

>retro_mluc_109
TTTAATAGTAGGCCAAATGAAAACTCTTATTGCTATCAACTTCTTCGACAATTAAATGAGCAGAGAAAGAAAGGTATTCT
TTGTGATGTCAGCATTGTGGTGAGCGGAAAAATCTTTAAAGCTCATAAGAACATCCTGGTTGCAGGCAGCCGTTTCTTTA
AGACTTTATATTGCTTTTCCAACAAAGAAAGCCCTAACCAAAACAATACTACCCACTTAGATATTGCTGCAGTTCAAGGT
TTCTCCATCATCTTGGACTTCCTGTACTCTGGTAACCTGGTGCTCACAAGCCAAAATGCCATTGAAGTGATGACCGTGGC
CAGCTATCTGCAAATGAGCGAAGTTGTTCAGACTTGCCAAAATTTCATTAAAGATGCCTTAAATATAAGCCTTAAATCTG
AAGCTCCGGAGTCTATGGTTGTGGACTATAACAACAGAAAACCAGTCAGTAGAGATGGCCTGTCTTCATCACGGGATCAA
AAAATTGCCAGTTTTTGGGCAACACGGAATCTTACCAATTTGGCAAGTAATGCAAAAACTGAAAATGATGGTTGCAATGT
CGATGAGAGCCAAATGGAGAACTACCAAATGAATGACAGTGGTTGGGTCCAGGATGGTTCACCTGAATTGGCTGAAAGTG
AAGCCCCAAGTCAAACAAAAGTGTTCATTTGGAATAATATGGGCTCCCAAGGAATTCAAGAAACTGGCAACAAAACAAGG
AGGAAAAACCAAACTCCAAAGAGATTTATTTATAATATACCACCTAATGATGAAACAAGTTTAGAAGTTTGCTCCGTGAT
GCAGCCACCTGTTGCCTTTCCAGAAGAAGGCATGTCATTCATTAAGGAAGAACCAGATCTGGATGGTGCTCTGCTCCCGG
GGCCGGACTGTGACAGGAATGCGAACGCAAACGTGCTGGCAGAAGCCAGCTTGGGGCAGGATGCAGGCGATGCTGGTACT
TCACATGCTTTCAAGTATGGCCTGACGCCTGGCCCATCAAGTGATTTCAAGTATGGCTTGCCACCAGGTGCTGCAAATGA
TTTCAAGGATGGATTGTGGCCTGAATCTTGGCCAAAACAAGAAACTTGGGGAAATGGTGAATCATCTCTAAACAGGAACA
AGTTAGAATGCCCTCATTGTACCTATGTAGCCAAATACAGACGAACGCTCAAAAGGCATTTGCTCACTCATACGGGAGTC
AGATCCTTTAGCTGTGAGATTTGTGGAAAACTGTTTACTCGCAGAGAGCATGTAAAAAGACATTCCCTGGTGCATAAAAA
GGATAAAAAATACAAATGTATGGTGTGTGAGAAGATCTTCATATTAGCTTCCAGTGTTGGAACCAGACATGGATCTCGAC
GCCATGGGATTTGTGTAGAATGTGCAAATAAACCACGGCCAGGAAGGCAAGAAGGTGTAGATCAGGGACAGGAGACAGAT
TTCCCTCGGGATGAAGAGTACGAGGAGAACGAAGGGGGAGAAGCCGAGGAAGAGCTGGCTGACGAGGGAGAAGAT

Alignment

ORF - retro_mluc_109 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.07 %
• Parental protein coverage: 53.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FNSRPNENSYCYQLLRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNT
          FNSRPNENSYCYQLLRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNT
Retrocopy FNSRPNENSYCYQLLRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNT

Parental  THLDIAAVQGFSVILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVV
          THLDIAAVQGFS.ILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTC.NFIKDALNIS.KSEAPES.V
Retrocopy THLDIAAVQGFSIILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCQNFIKDALNISLKSEAPESMV

Parental  VDYNNRKPVSRDGLSSSRDQKIASFWATRNLTNLASNVKTENDGCNVDEGQMENYQMNDSGWAQDGSPEL
          VDYNNRKPVSRDGLSSSRDQKIASFWATRNLTNLASN.KTENDGCNVDE.QMENYQMNDSGW.QDGSPEL
Retrocopy VDYNNRKPVSRDGLSSSRDQKIASFWATRNLTNLASNAKTENDGCNVDESQMENYQMNDSGWVQDGSPEL

Parental  TESEAPSQTKVFIWNNMGSQGIQETGNKTRRKNQTAKRFIYNIPPNNETSLEDCSVMQPPVAYPEEDMSF
          .ESEAPSQTKVFIWNNMGSQGIQETGNKTRRKNQT.KRFIYNIPPN.ETSLE.CSVMQPPVA.PEE.MSF
Retrocopy AESEAPSQTKVFIWNNMGSQGIQETGNKTRRKNQTPKRFIYNIPPNDETSLEVCSVMQPPVAFPEEGMSF

Parental  IKEEPDLDGALLPGPDCDRNVNANVLAEASLGQDAGDAGTSHDFKYGLMPGPSSDFKYGLLPGTSNDFKY
          IKEEPDLDGALLPGPDCDRN.NANVLAEASLGQDAGDAGTSH.FKYGL.PGPSSDFKYGL.PG..NDFK.
Retrocopy IKEEPDLDGALLPGPDCDRNANANVLAEASLGQDAGDAGTSHAFKYGLTPGPSSDFKYGLPPGAANDFKD

Parental  GLLP
          GL.P
Retrocopy GLWP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_109 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000027816	2 retrocopies	retro_mluc_109 , retro_mluc_423,