RetrogeneDB ID: retro_mluc_1099

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429794:3301309..3301750(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CLDND1
• Ensembl ID: ENSMLUG00000013947
• Aliases: None
• Description: None

Sequence

>retro_mluc_1099
GCTCCAGCTTTTGTAATTGCTTGTGTGCTTAGCCTCATTTCCATCATCTACATGGCAGCCTCAATGGGCAGAGACTTCTG
CTCTGAATATCAAAGTTCAGTTCAAGGAAATTCCAGTGCTTTGAACAAAAAGCATCTGGAATGACTTCGCTAGGGACGAG
GCAGAGGAAGAGCCTGACAATGACGCACTGTTTCAGGAGAATGGCACAGTGGGATGTGGAGGCGGTGCACCACTCTACCG
CAAAGGTGTGTGGGAATAACCAAGAAAGGACAGGCTCATTGATGTGGTCACAAGATGCACGAGTTTCACACTAAGTGAGC
AGCTCATGGAGAGGTTTGCTGACCCTGGAAACCCCAGTAGTGGATTGATCTGCTTCGGACCTATCTTTGGCATTGCCAGT
TCCCTTTACCTTTCATTCATTTAGGTGTGATGTGTCTGGGG

Alignment

ORF - retro_mluc_1099 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.67 %
• Parental protein coverage: 53.82 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  ATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLN-KSLWSDFASDEADEKTYSDVLFRYNGT
          A.AFVIACVLSLIS.IYMAAS.G.DF..EY.S.VQ.NSS.LN.KS.W.DFA.DEA.E....D.LF..NGT
Retrocopy APAFVIACVLSLISIIYMAASMGRDFCSEYQSSVQGNSSALN>KSIWNDFARDEAEEEPDNDALFQENGT

Parental  M-GLWRRCVSIPQ-NVYWNNQERTES-FDVVTRCTSFTLNEQFMAKFVEPGNHNTG-IDLLRTYLWRCQF
          ..G.WRRC...PQ..V..NNQERT.S..DVVTRCTSFTL.EQ.M..F..PGN...G.IDLLRTYLW.CQF
Retrocopy V<GMWRRCTTLPQ<KVCGNNQERTGS<IDVVTRCTSFTLSEQLMERFADPGNPSSG<IDLLRTYLWHCQF

Parental  LLPFVSLGLMCFG
          .LPF..LG.MC.G
Retrocopy PLPFIHLGVMCLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1099 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000001155	1 retrocopy	retro_meug_1250,
Myotis lucifugus	ENSMLUG00000013947	1 retrocopy	retro_mluc_1099 ,
Oryctolagus cuniculus	ENSOCUG00000017858	1 retrocopy	retro_ocun_1085,