RetrogeneDB ID: retro_mluc_114

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429824:3525265..3528925(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026908
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011048
• Aliases: None
• Description: None

Sequence

>retro_mluc_114
ATGAAAGAACAGGTGAAGGTAATTCCTGTCAGAGTGGCACTGCGATGTCGCCCTCTGGTCCCCAAAGAGATCAGTGAAGG
CTGCCAGATGTGCCTTTCCTTCATACCTGGGGAACCACAGGTGGTGGTTGGCAATGACAAAGCCTTCACCTACGATTTTG
TGTTTGACCCCTCTACTGAGCAGGAAGAAGTCTTTAATACAGCAGTAGCGCCACTCATAAAAGGCATATTTAAAGGATAC
AATGCAACTATCCTGGCCTATGGACAGACTGGCTCAGGGAAAACCTATTCCATGGGAGGCGTATACACTGCAGAGCAGGG
GAATGAACCAACAGTTGGGGTCATTCCTAGGGTAATACAACTGCTCTTCAAAGAAACCGATAAGAAGAGTGACTTCGAAT
TTACTCTGAAAGTCTCATATTTGGAGATTTACAATGAAGAAATTGTGGATCTTCTCTGCCCATCTCGTGAGAAAGCCTCT
CAAATAAATATACGAGAGGACCCTAAGGAAGGCATAAAGATCACGGGGCTCACTGAAAAGACTATTTTGGTTGCCCCGGA
TATGATTTCCTATTTGGAGCAGGGCAACCACTGTAGGACTGTGGCCTCCACAGCCATGAACTCCCAGTCATCCCGGTCTC
ACGCCATCTTTACCATCTCCATGGAGCAAAGAAAGAAAAGTGACAAGAATAGCAGCTTCCACTCCAAGCTGCATCTTGTA
GATCTTGCTGGATCAGAAAGACAGAAAAAAACCAAGGCTGAAGGGGATCGGCTCAAAGAGGGTATTAATATTAACCGAGG
CCTCCTATGCTTGGGAAATGTAATCAGTGCCCTTGGAGATGACAAAAAGGGTGGCTTTGTGCCCTATAGAGATTCCAAGT
TGACTCGACTGCTTCAAGATTCCCTCGGAGGCAACAGCCACACTCTTATGATAGCCTGTGTCAGTCCTGCTGACTCCAAT
CTAGAAGAAACATTAAATACCCTTCGCTATGCTGACAGAGCAAGAAAAATCAAAAACAAACCTGTTGTTAATATTGATCC
CCAGACAGCTGAACTTAATCATCTGAAGCAACAAGTACAACAGCTACAGGTCTTATTGCTACAAGCCCGCGGAGGTAGCT
TGCCTGGATCTATAAATGTGGAACCATCAGAGAATCTACAATCTTTGATGGAGAAGAATCATTCCCTGATAGAGAAGAAT
GAAAAATTAAGCCATGGTCTGAGTGAGGCAGCTGGTCAGACAGCCCAGATGTTGGAGAGAATTATTTTGACAGAACAAGC
AAATGAAAGAATGAATGCCAAACTAGAAGCACTCAGGCAGCATGCAGCCTGCAAAGTGGATCTTCAAAAGCTGGTGGGGA
CTTCAGAAAGCCAGGAATTAAAAGAAAATGTAGAGATGATTCGTAACCTGCAGCAACTGATTATCCAGATATCGGATGAA
ACTGGTTCTTACATGGCCGCAGCCATGGATACTGCAGTGGAACCAGAAGCTCAGGTGGAAAGCAGTTCGCAGACCAGGAG
GTCTTCTGATGGCTTCACTACTCAACATGCTCTGCGTCAGGCTCAGATGTCTAAGGAGCTGGTGGAGTTGAATAAAGCCC
TTGCACTGAAAGAGGCCCTGGCCAGGAAGATGACTCAGGATGGCAGCCAACTTCAGCCCATTCAGTTGCAGGACCAGGAA
AACATCAAAAATCTAGAGTTGGAAGCCATCAATCTGCAAAAGGAAAAGGAAGAATTGCTGCTTGAACTTGAGACAACAAA
GAAGAATGTCAACCAAGCCAAGTTGGGTGAGCGCCGCCACAGACGTCTACAGGAGCTAGAGTGTCAAATAGCTGATCTGA
AGAAGAAACTGAGCGAACAGTCCAAACTTCTGAAGCTGAAAGAATCCACAGAGCATACCATCTCCAAGCTGAACCAGGAC
ATACAGGCGATGAAAAACCAGCGGGTACAGTTAATGCGTCGGATGAAAGAGGATGCTGAGAAGTTTAGACAGTGGAAGCA
ACAAAAAGACAAAGAAGTAATCCAATTGAAAGCACAAGACCGGAAAAGGCAATATGAGATGCTCAAACTGGAAAGAAACT
TCCAGAGGCAGTCTAATGTGCTTCGACGTAAAACTGAGGAGGCAGCAGCTGCCAACAAGAGGCTCAAGGATGCTCTCCAA
AAGCAACGGGAGGTCTCAGAGAGGAGGAAAGAAACTAAGAGCCAAGGGGTGGAAGGCACCGCAGCCCGAGTGAAGTGTTG
GCTTGGAAATGAAATTGAAGTTATGGTCAGTACTGAAGAGGCCAAATGCCACTTGAATGACCTTCTTGAAGATAGAAAGA
TCCTGGCTCAGGATCTGGCTCAACTCAAAGAAAAAAGGGAATCTGGGGAGAATCCACCTCCTAAACTTCGGAGGCACACA
TTCTTACTTGCTCAACGGCATGGCCAAGTTTCTGAGTCCGAAGATCCCACTACAAAGCAGATTGAGAGCCTCGAGACTGA
AGTGGAGCTCAGGAGTGCTCAGATTGCCGACCTACAGCAGAAGCTGCTGGATGCAGAAAGCGAAGACAGGCCAAGACACC
GCTGGGAGAATATTGCTACCATTCTGGAAGCCAAGTGTGCTGTGAAATTTTTAATCGGAGAGCTGGTCTCCTCCAAAATA
CAGGTTGGCAAGCTTGAAAGCCTCCTGAAACAGAACAAGGCCAGCTGTGCTGACATGCAGAAGATGCTGTTTGAGGAACG
GCATCATTTTGCTGGAATAGAGGCAGACTTGCAGGCAGAGCTGTTCAGAGTGGGGCAGCAGCATCAAGAGGAGGTGCTGT
ATCTTCTGGGCCAGCTGCAGCGAAGCCAAATGGCAGCGAAGCAGCTCGAGCTGTCAGACATGGAAAAGGAGCAACAGCCG
TGGAGCACACTGCAGTGTCGGGAAGAACTGGAGAAGATGCAGGAAGTGTGTGTGCAAAATAAGCAGCTTCTCCGAGAGAA
TGAAATCATGAAGCAAGTAGCCAGAAAACAGAAACCTCACCTTCCGAAAGATACCCTTCTATCCCCAGACTCTTCTTTCG
AATATATCCCACCTAGGCCAAGACCTTCCCGTCTTAAAGAAAAGTTCCTGGAGCAAAGCATGGAAGTCAAGGATCTAAAA
TACTGTCCAGAGGATTCTGTGAGTGAGCCCGAGGATGGTGACATTGATGCTGGGGATGATGAGGAATGGAAGCCAACAAA
ATTATTTAAGACATCCAAGAGGACCATCCAAGGATGCTCCTGCAAGGGCTGGTGTGGGAATAAGCATTGTGGATGCAGGA
GACAGGCATCGAACTGTGGGGTGGACTGCAGCTGCGACCCCACAAAGTGTAGGAACCGTCAGCAAGACAAAGATAGCGTG
GGCACCGTTGAGCGGACCCAGGATTCCGAAGGCTCCTTCGCCCTGGAGGATCCCACAGAGGTGACCCCAGGATTGAGCTT
CTTCAACCCTGTCTGTGCCACTCCGAACAGCAGAATCCTGAAGGAGCTGTGTGAGGTGGAGCAGGCTCTGGCCGCCTCCT
GCCTTGGCCTCCCTGAGCTGAAACATGTAGCCGCCGATTCCCAAGGAAATAAAGCTCCAGGGAGGAAAAGGAAGCGAGCT
CTGACCAGCAATGCCAGCTTCTTCTCAGGCTGCTCGCCTGTGGACGAAGAGGCCCCCTGA

Alignment

ORF - retro_mluc_114 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.72 %
• Parental protein coverage: 75.49 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GININRGLLCLGNVISALGDDKKGGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLNTLRY
          GININRGLLCLGNVISALGDDKKGGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLNTLRY
Retrocopy GININRGLLCLGNVISALGDDKKGGFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLNTLRY

Parental  ADRARKIKNKPIVNIDPRTAELNHLKQQVQQLQVLLLQAHGGTLPGSINVKPSENLQSLMEKNQSLVEEN
          ADRARKIKNKP.VNIDP.TAELNHLKQQVQQLQVLLLQA.GG.LPGSINV.PSENLQSLMEKN.SL.E.N
Retrocopy ADRARKIKNKPVVNIDPQTAELNHLKQQVQQLQVLLLQARGGSLPGSINVEPSENLQSLMEKNHSLIEKN

Parental  EKLSRGLSEAVGQTSQLLERIIVTEQANEKMNAKLEELKQHAACKVDLQKLVGNLEDQELKENVEKICNL
          EKLS.GLSEA.GQT.Q.LERII.TEQANE.MNAKLE.L.QHAACKVDLQKLVG..E.QELKENVE.I.NL
Retrocopy EKLSHGLSEAAGQTAQMLERIILTEQANERMNAKLEALRQHAACKVDLQKLVGTSESQELKENVEMIRNL

Parental  QQLINQISDETVACMAADIDAGVDPEAQVETCLPTSRSSDGFTTQHVLRQAQMSKELVELNKALARKEAL
          QQLI.QISDET...MAA..D..V.PEAQVE....T.RSSDGFTTQH.LRQAQMSKELVELNKALA.KEAL
Retrocopy QQLIIQISDETGSYMAAAMDTAVEPEAQVESSSQTRRSSDGFTTQHALRQAQMSKELVELNKALALKEAL

Parental  ARKMTQDGSQLQPIQFQYQDNIKNLELEVINLQKEKEELVLELQTTKKDINQAKLSERRRKRLQELEGQI
          ARKMTQDGSQLQPIQ.Q.Q.NIKNLELE.INLQKEKEEL.LEL.TTKK..NQAKL.ERR..RLQELE.QI
Retrocopy ARKMTQDGSQLQPIQLQDQENIKNLELEAINLQKEKEELLLELETTKKNVNQAKLGERRHRRLQELECQI

Parental  TDLKKKLNEQSKLLKLKESTEHTISKLNQEIRVMKNQRVQLMRQMKEDAEKFRQWKQQKDKEVIQLKERD
          .DLKKKL.EQSKLLKLKESTEHTISKLNQ.I..MKNQRVQLMR.MKEDAEKFRQWKQQKDKEVIQLK..D
Retrocopy ADLKKKLSEQSKLLKLKESTEHTISKLNQDIQAMKNQRVQLMRRMKEDAEKFRQWKQQKDKEVIQLKAQD

Parental  RKRQYELLKLERNFQKQSNVLRRKTEEAAAANKRLKDALQKQREVADKRKETQSREMEGTATRVKSWLGN
          RKRQYE.LKLERNFQ.QSNVLRRKTEEAAAANKRLKDALQKQREV...RKET.S...EGTA.RVK.WLGN
Retrocopy RKRQYEMLKLERNFQRQSNVLRRKTEEAAAANKRLKDALQKQREVSERRKETKSQGVEGTAARVKCWLGN

Parental  EIEVMVSTEEAKRHLNDLLEDRKILAQDLAQLKEQKESGENLPSKFRRRTFSVAELHGQVSESEDSITKQ
          EIEVMVSTEEAK.HLNDLLEDRKILAQDLAQLKE..ESGEN.P.K.RR.TF..A..HGQVSESED..TKQ
Retrocopy EIEVMVSTEEAKCHLNDLLEDRKILAQDLAQLKEKRESGENPPPKLRRHTFLLAQRHGQVSESEDPTTKQ

Parental  IESLETEIELRSAQIADLQQKLLDAESEDRPKHRWENIATILEAKCAMKYLIGELVSSKIQVSKLESNLK
          IESLETE.ELRSAQIADLQQKLLDAESEDRP.HRWENIATILEAKCA.K.LIGELVSSKIQV.KLES.LK
Retrocopy IESLETEVELRSAQIADLQQKLLDAESEDRPRHRWENIATILEAKCAVKFLIGELVSSKIQVGKLESLLK

Parental  QNKASCADMQKMLFEERNHIAEKETELQAELFRMEQQHQEKVLYLLSQLQQSQMAEKQPEVSVSEKKQQL
          QNKASCADMQKMLFEER.H.A..E..LQAELFR..QQHQE.VLYLL.QLQ.SQMA.KQ.E.S..EK.QQ.
Retrocopy QNKASCADMQKMLFEERHHFAGIEADLQAELFRVGQQHQEEVLYLLGQLQRSQMAAKQLELSDMEKEQQP

Parental  RSTLKCQEEELEKMQEVYAQNKQLLRENEIIKQ
          .STL.C..EELEKMQEV..QNKQLLRENEI.KQ
Retrocopy WSTLQCR-EELEKMQEVCVQNKQLLRENEIMKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_114 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015566	1 retrocopy	retro_cjac_2142,
Cavia porcellus	ENSCPOG00000000211	1 retrocopy	retro_cpor_681,
Homo sapiens	ENSG00000090889	1 retrocopy	retro_hsap_18,
Gorilla gorilla	ENSGGOG00000006631	1 retrocopy	retro_ggor_2218,
Myotis lucifugus	ENSMLUG00000011048	1 retrocopy	retro_mluc_114 ,
Mus musculus	ENSMUSG00000034311	1 retrocopy	retro_mmus_268,
Pongo abelii	ENSPPYG00000020438	1 retrocopy	retro_pabe_2700,
Rattus norvegicus	ENSRNOG00000038035	1 retrocopy	retro_rnor_2330,