RetrogeneDB ID: retro_mluc_1162

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429801:5438854..5439566(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CSK
• Ensembl ID: ENSMLUG00000013625
• Aliases: None
• Description: None

Sequence

>retro_mluc_1162
TACCAGCACAGCAAGCTCAGCAGTGACAAGGAGGTGCCCTTGGAGAAACCCATGCTGCTGGTGGATCATCACTACCCCTC
AGACACCATAGACGCTGTACGAGCCTCATCAGGTCAAAGGTCATAGAGGGCACAGTGCGGGCTCAGGATGAGGTCTCTCA
TAGGAGCTGGGCGCTGACCATGACGAACCTGAAACTACTGCAACCACTGGGAGGAGGAAATATGGGGACCTGATGCTGGA
AGTGACCGAAGAAAACACATTCTCTCTACAATGCATTAAGGGTTGACGCCACTGCTCAGGCCTTTCTTGCTGAAGCCTTG
GCCATGACACAACTTTGGCATGGTGCCACGTGTGGCTTCTGGGTGTGATTGTGGAGGAAAGAGGTGGGCTCTGCTTTAGT
CACTGAGAACATGGAGGAGGAGAGCCTGGTGGATTTTCTGCAGGGGCAGAGTCTATTGATGCTGCACAGAGACTGTCTAC
TCAAGTTCTCAGTGGATGTCTTCAAGGTCATGGAATATCTGGAGGGCAACAACTTCTGGACTGAGACCTGTCTTTCCACA
ATTTGCCAGTGTCCTGGAACTAAGTGGCCAATGACAGCAACTTCAACCTCATCAAGGAAGTCTCTAGCACAGGGACAAAG
ACAGGCTTCAGGTCAAAGTGCACAGCACCTGAGGCCATGAGAGTGAAGGTATTCTCCACCAAGTCTGAAGTG

Alignment

ORF - retro_mluc_1162 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.92 %
• Parental protein coverage: 52.67 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  YHASKLSIDEEVYFENLMQLVEH-YTSDADGL-CTRLIKPKVMEGTVAAQDEFFRSGWALNMKDLKLLQT
          Y..SKLS.D.EV..E..M.LV.H.Y.SD.....CT.LI..KV.EGTV.AQDE.....WAL.M..LKLLQ.
Retrocopy YQHSKLSSDKEVPLEKPMLLVDHHYPSDTIDA<CTSLIRSKVIEGTVRAQDEVSHRSWALTMTNLKLLQP

Parental  IGKG-EFGDVMLGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQLRHSNL-VQLLGVIVEEKGGL-YIVT
          .G.G...GD.ML.....N.....CIK..DATAQAFLAEA..MTQL.H....V.LLGVIVEE.GGL...VT
Retrocopy LGGG<KYGDLMLEVTEENTFSLQCIKG>DATAQAFLAEALAMTQLWHGAT<VWLLGVIVEERGGL>ALVT

Parental  EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNF-VHRDLAARNVLVSEDNVAKVSDFGL
          E.M...SLVD.L.......L..DCLLKFS.DV...MEYLEGNNF....DL...N..VS...VA..S.F.L
Retrocopy ENMEEESLVDFLQGQSLLMLHRDCLLKFSVDVFKVMEYLEGNNF<LD*DLSFHNLPVSWN*VANDSNFNL

Parental  TKEASSTQDTGKLPVKWTAPEALREKKFSTKSDV
          .KE.SST........K.TAPEA.R.K.FSTKS.V
Retrocopy IKEVSSTGTKTGFRSKCTAPEAMRVKVFSTKSEV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1162 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000013581	1 retrocopy	retro_ecab_639,
Myotis lucifugus	ENSMLUG00000013625	1 retrocopy	retro_mluc_1162 ,
Sus scrofa	ENSSSCG00000001900	1 retrocopy	retro_sscr_953,