RetrogeneDB ID: retro_mluc_1173

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429803:3826259..3827367(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAP3K7
• Ensembl ID: ENSMLUG00000003344
• Aliases: None
• Description: None

Sequence

>retro_mluc_1173
GATGAGATTGGTGGCCCAGCTTTCCGTATCATGTGGGCTGTTCCTAATGGTACTCAACCACCACTGATCAAAAATTTTTC
TAAGCCCGTTGAGAGCCTGATGACTCGCTGTTGGTCTAAGATCCTTCTCTATGCTCTTCCATGGAGGAGATTGTGAAAAT
AATGGCTCACTTCATGCGGTACTTTGCAGGAGCGGATGAGCCCCTGCAGTACCCCTGTCTGTACTCGGATGAGGGACAGA
GCACCTCGGCCACCAGTACAGGCTCATTCACAGACATTGCTTCTACAAATACCAGTAATAAAAGTGACACTAATATGGAG
CAAGTTCCTTCCACAAGTGATACTATTAAACGCTTAGAATCAAAATTATTGAAAAATCAGGCAAAGCAATAGAGTGAATC
TGGCCGTTTAGCTTCCATGGGAACGGTGTAGAGAGCTTGTCCCCAACCTCCGAGGGCAAGAGGATGAGTGCTGACATGTC
TGAAATAGAAGCCAGGATTGCTGCAACCACAGCCTGTCCCAAGCCTAACGGGGGCCATCAGAAAACTGCTTCATCTGGCA
ACATTCTGGATGTCCCTGAGATCATCCTATCAGGCAATGGACAGCCAAGACATAGATCCATCCAAGACTTGATTGTTACT
GGAACAGAACCTCGTCAGGTGAGCAGTAGGTCATCCAGTCCTAGCGTCAGAATGATCACGACTACCTCAGGACCAACCGC
AGAAAAGTCAGCTCGAAGTCATCCATGGGCTCCTGATGATTCCACAGATACCAATGGATCAGATAACTCCATCCGAATGG
CTTGTCTTACCCTGGGTCACTAGCCTCTAGCACCCTGCCCAAATGCCAGAGAATCTATGGCAGTGTTTGAACAGCATTGA
AAAATGGCACAAGAATATATGAAAGTTCAAACAGAAATTGCATTATTATTACAGAGAAAGCAAGAACTAGTTGCAGAACT
GGACCAGGATGAAAAGGACCAGCAAAATGCATCTCGTCTGGTACAGGAACATAAAAAGCTTTTAGATGAAAACAAAAGCC
TTTCTACTTACTACCAGCAATGCCATAAACAATGAGAGGTCATCAGAAGTCAGCAGCAAAAACAGCAA

Alignment

ORF - retro_mluc_1173 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.77 %
• Parental protein coverage: 61.84 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESLMTRCWSK-DPSLRPSMEEIVKIMTHLMRYFPGADEPL
          DEIGGPAFRIMWAV.NGT.PPLIKN..KP.ESLMTRCWSK.DPSL..SMEEIVKIM.H.MRYF.GADEPL
Retrocopy DEIGGPAFRIMWAVPNGTQPPLIKNFSKPVESLMTRCWSK<DPSLCSSMEEIVKIMAHFMRYFAGADEPL

Parental  QYPCQYSDEGQSNSATSTGSFMDIASTNTSNKSDTNMEQVPSTNDTIKRLESKLLKNQAKQQSESGRLSL
          QYPC.YSDEGQS.SATSTGSF.DIASTNTSNKSDTNMEQVPST.DTIKRLESKLLKNQAKQ.SESGRL..
Retrocopy QYPCLYSDEGQSTSATSTGSFTDIASTNTSNKSDTNMEQVPSTSDTIKRLESKLLKNQAKQ*SESGRL--

Parental  GASRG-NSVESLPPTSEGKRMSADMSEIEARIAATTACSKPKRGHRKTASFGNILDVPEIVISEGNGQPR
          .AS.G.N.VESL.PTSEGKRMSADMSEIEARIAATTAC.KP..GH.KTAS.GNILDVPEI..S.GNGQPR
Retrocopy -ASMG<NGVESLSPTSEGKRMSADMSEIEARIAATTACPKPNGGHQKTASSGNILDVPEIILS-GNGQPR

Parental  RRSIQDLTVTGTEPGQVSSRSSSPSIRMITTTSGPTSEKSARSHPWTPDDSTDTNGSDNSIPMAYLTLDH
          .RSIQDL.VTGTEP.QVSSRSSSPS.RMITTTSGPT.EKSARSHPW.PDDSTDTNGSDNSI.MA.LTL.H
Retrocopy HRSIQDLIVTGTEPRQVSSRSSSPSVRMITTTSGPTAEKSARSHPWAPDDSTDTNGSDNSIRMACLTLGH

Parental  QLQPLAPCPNSKESMAVFEQHCKMAQEYMKVQTEIALLLQRKQELVAELDQDEKDQQNTSRLVQEHKKLL
          ...PLAPCPN..ESMAVFEQH.KMAQEYMKVQTEIALLLQRKQELVAELDQDEKDQQN.SRLVQEHKKLL
Retrocopy --*PLAPCPNARESMAVFEQH*KMAQEYMKVQTEIALLLQRKQELVAELDQDEKDQQNASRLVQEHKKLL

Parental  DENKSLSTYYQQCKKQLEVIRSQQQKRQ
          DENKSLSTYYQQC.KQ.EVIRSQQQK.Q
Retrocopy DENKSLSTYYQQCHKQ*EVIRSQQQKQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1173 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001962	1 retrocopy	retro_chof_1819,
Myotis lucifugus	ENSMLUG00000003344	1 retrocopy	retro_mluc_1173 ,
Mus musculus	ENSMUSG00000028284	1 retrocopy	retro_mmus_579,