RetrogeneDB ID: retro_mluc_1181

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429804:3153478..3155281(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026552
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C1ORF116
• Ensembl ID: ENSMLUG00000007381
• Aliases: None
• Description: None

Sequence

>retro_mluc_1181
ATGCCTGAGAGGGAGCTGTGGCCAGAGGGGCCTGGCTCAGAACCTGTGACCCGCCTCGGCAGCTGGGACAGCATGACGAG
CACCACCTCCACCCGCTCCGGATCTACTGACAGCTATGACTTCCTGTCCACTGAAGAGAAGGAGTGTTTGCTCTTCCTGG
AGGAGACCACTGGCTCATTGGACACTGAGGCTGACAGCGGACTGTCCACTGAGGAGTTTGAGCAAGACACAACTCCCCAA
AGTCCCCGAGCACTGCCCCTACTCCAGCCTGCTCCCCAGGGACATCCAGAGGACACCGTTGCTCAGCAAAGACCAGAGCC
AAGGAGAGCAACCCAGTCCAGTTTCCCTCCTCTGCCTGAACCCCAAGGCCTGGGCTTCAGATCTGGCTCCTACAGCCTCC
CCCGCAATATCCACATCAGTAGGAACCAGAACCTCAGGAAAAGCACCCCCCAGACGAGTAGCCACCTGCCAGGGGAACCC
AACAGGGTCATCCCAGACCCCAGGGAAGAGCAGCTCAGCCAGAGCAGGGAGCCCAGCCAGGCTCCGGCCGGGCTCCAGGA
GGCCGTCCTTGATTTGGACACAGCGCTCATCCCCCCACCAGAGGCTTTCCAGGAAGCCCAGCCCGAGCAGCGTGGGGAAG
ACAGCCTGCCTACAGGGCCAGGGGAGAGGACCCCTGCGCCTTAGCTCCTCACGTCACTCAGCCCCCAGAAGAGAAAGGAG
ACTTCTTCAGAGGCCATGTCCCAAAAAGCCAATGAGAAAGGCTCTACGGGGGCACCAGGACAGCTTCGGCCTCTTCCTGC
CATGTCGTCTCAGAACGCCAGAGCTGCAGATGCTTCCGTCCCACCAGGGCGGGATCCAAATGCCCAAGTGGCTCCCCTCA
CAGGGCCTAAGTCCCGGAAGCTGCCCGCTAATATTGTTCTCAAGAGCAGCCAAAGCCGTTTCCACAGCGACCCCCAGCCC
TGGCTGTCCTGCCACCCTGAGGCTGCCCCCAGCGATTCCGGCCTGCTCTCCTCTTCACTGCAGGAGCAGAGGAAAGCACG
CAAGGAGGCTCTGGAGAAGCTGGGGCTACCCCTGGACCAAGAGAAGCCCAGCCCCCACTTAAGTAAGTCCCCCAGCTCCA
TCAGACTCAAGGGGACTGGCGCTCAGGCCCCTGCCCCAGCCCCAGCATCAGCTCCTGCCCTAGCTCAGCCTGCACCTCAG
GTCTCAGCAGGGAAGGCATTGGCTCCTGCTCCAACCCGGGGGCCTTCTCCAATGAAAGCCCTGGCTCCAGCTCTAGCTCA
GGGATCGACTCCAGGCAAGGTTTTCATTCCTGCCCAGGAACCCACTCCAGGGAAGGTTCCAGCTGCCAAGTCTATGCCAA
TCCCCATCCCTAGGGCCCCAGGGGTAAGTAATCCCCTGACACTGCAGGAGAGCAGCGTCCCTGGGCTGAGGCAGATGAAC
TTCAAGTCCAACACTCTGGAGCAGTCAGGTGTGGGGCTGAGCAGCTACCTCTCAGCTGAGAAAGACCCCAGCTCCAAGGC
CAGCACCTCTCTGGGAAAAGACTCCTTCTTGAACAAACTCTCACCCAATGTCTTGCGTAATTCCCGGCCCCGCCCCGCCT
CCTTGGGCACTGGGAAGGACTTTGCAGGGATTCAGGTGAGCATGCTGGCTGACCACGAGCAGAGCTCCAAGCGCCTGTCT
TACCAAGGACAGAGCCGAGACAAGCTGCCTCAACCCACTTGTGTCAGTGTCAAGATTTCCCCCAAAGGCATCCCTGATGA
GCACAGAAGGGAGGCTCTGAAGAAGCTGGGACTGTGGAAGGAG

Alignment

ORF - retro_mluc_1181 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.69 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPERELWPEGPGSEPVTRIGSWDSMTSTTSTRSGSTDSYDFLSAEEKECLLFLEETIGSLDTEADSGLST
          MPERELWPEGPGSEPVTR.GSWDSMTSTTSTRSGSTDSYDFLS.EEKECLLFLEET.GSLDTEADSGLST
Retrocopy MPERELWPEGPGSEPVTRLGSWDSMTSTTSTRSGSTDSYDFLSTEEKECLLFLEETTGSLDTEADSGLST

Parental  EESEQDTTPQSPRALPLLQPAPQGHPEETVAQQRPEPRRATQSSFPPLPEPQGLGFRSGSYSLPRNIHIS
          EE.EQDTTPQSPRALPLLQPAPQGHPE.TVAQQRPEPRRATQSSFPPLPEPQGLGFRSGSYSLPRNIHIS
Retrocopy EEFEQDTTPQSPRALPLLQPAPQGHPEDTVAQQRPEPRRATQSSFPPLPEPQGLGFRSGSYSLPRNIHIS

Parental  RNQNLRKSTPQTNSHLPGEPNRVIPDPKEEQLSQSQSREPSQAPAGLQEAALDLDIALIPPPEAFRDAQP
          RNQNLRKSTPQT.SHLPGEPNRVIPDP.EEQLSQS..REPSQAPAGLQEA.LDLD.ALIPPPEAF..AQP
Retrocopy RNQNLRKSTPQTSSHLPGEPNRVIPDPREEQLSQS--REPSQAPAGLQEAVLDLDTALIPPPEAFQEAQP

Parental  EQRGEDSLPTGPGERTPAPQLLTSLSPQKRKETSSEAMSQKANEKGSTGAPGQPRPLPAMSSQNARAADA
          EQRGEDSLPTGPGERTPAP.LLTSLSPQKRKETSSEAMSQKANEKGSTGAPGQ.RPLPAMSSQNARAADA
Retrocopy EQRGEDSLPTGPGERTPAP*LLTSLSPQKRKETSSEAMSQKANEKGSTGAPGQLRPLPAMSSQNARAADA

Parental  SVPPGRDPNAHVAPLTGPKPRKLPPNIVLKSSRSSFHSDPQPWLSRHPEAAPGDSGLVSSSLQEQRKARK
          SVPPGRDPNA.VAPLTGPK.RKLP.NIVLKSS.S.FHSDPQPWLS.HPEAAP.DSGL.SSSLQEQRKARK
Retrocopy SVPPGRDPNAQVAPLTGPKSRKLPANIVLKSSQSRFHSDPQPWLSCHPEAAPSDSGLLSSSLQEQRKARK

Parental  EALEKLGLPLDQEKPSPHLTKPPSSIRLKGTGAQAPAPAP--APALAQPAPQVSAGKALAPAPTRGPSPM
          EALEKLGLPLDQEKPSPHL.K.PSSIRLKGTGAQAPAPAP..APALAQPAPQVSAGKALAPAPTRGPSPM
Retrocopy EALEKLGLPLDQEKPSPHLSKSPSSIRLKGTGAQAPAPAPASAPALAQPAPQVSAGKALAPAPTRGPSPM

Parental  KALAPALAQGSTPGKVFIPAQEPTPGKVPAAKSMPIPIPRAPGVSNPLTLQESSIPGLRQMNFKSNTLER
          KALAPALAQGSTPGKVFIPAQEPTPGKVPAAKSMPIPIPRAPGVSNPLTLQESS.PGLRQMNFKSNTLE.
Retrocopy KALAPALAQGSTPGKVFIPAQEPTPGKVPAAKSMPIPIPRAPGVSNPLTLQESSVPGLRQMNFKSNTLEQ

Parental  SGVGLGSYLSAEKDPSSKASSSLGKDSFLNKLSPNVLRNSRPRPASLGTGKDFAGIQVSMLADHEQSSKR
          SGVGL.SYLSAEKDPSSKAS.SLGKDSFLNKLSPNVLRNSRPRPASLGTGKDFAGIQVSMLADHEQSSKR
Retrocopy SGVGLSSYLSAEKDPSSKASTSLGKDSFLNKLSPNVLRNSRPRPASLGTGKDFAGIQVSMLADHEQSSKR

Parental  LSYQGQSRDKLPRPTCVSVKISPKGIPDEHRREALKKLGLWKE
          LSYQGQSRDKLP.PTCVSVKISPKGIPDEHRREALKKLGLWKE
Retrocopy LSYQGQSRDKLPQPTCVSVKISPKGIPDEHRREALKKLGLWKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1181 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000007381	1 retrocopy	retro_mluc_1181 ,