RetrogeneDB ID: retro_mluc_1186

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429805:799170..799861(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KIN
• Ensembl ID: ENSMLUG00000002261
• Aliases: None
• Description: None

Sequence

>retro_mluc_1186
TACTGCCAGATGTGCTAGAAGCACTGCCGGGATGAGAATGGCTTTGAGTGTCACTGTATGTCTGAATCTCCTCAGAGACA
ACTGTTGCTGGCTTCAGAAAATCCTCAGTAGTTTACCTATTATTTTTTAGAGGAATTCCGAAATGACTTCCTAGAACTTC
TCAGGCGATGCTTTGGCACAAAGAGAGTTCACAACAATGTGGTTGTGATGAGTATATCAGTAGCTGAGAGCACATCCACA
TGAATGCCACTCAGTGGGAGACTCTGACGGATTTCACAAGTGGCTGGGCAGAGACGGCTTGTGCAAAGTGGACGAGATGC
CCAAAGGCTGGTGTATTCAGTACATTGACAGGGATCCAGAAACCATCTGCTGGCAACTGGAGCTAGAGAGAAAAAATAAG
CAGGGCCTTGATGATGAATAAAAAATTGCCAAATTTATTGAACAACAGGTGAGAAGAGATCTGGAAGGGGAAGCAAAGGA
GGCCCCTATTTTGGCAGAATTAAGCAGAGAAAACGATGATGAGAAAGTGACATTTAATTGGAATAAAAGAGCACAGAGTT
CAACAGCAACATCTCCCAAGTCAAGTTCTTTGGGACCAAGTGCATTGAAGGTGATAGGGATGGCAGCGTCAGTGAAGTGG
AATCTTCCCATAACTCAGCGCAACCAAAAGAAGAAAAGGAGATGGAAGAGG

Alignment

ORF - retro_mluc_1186 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.54 %
• Parental protein coverage: 58.93 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVY-
          YCQMC.K.CRDENGF.CHCMSES.QRQLLLASENPQ.F..YF.EEFRNDFLELLRR.FGTKRVHNN.V..
Retrocopy YCQMC*KHCRDENGFECHCMSESPQRQLLLASENPQ*FTYYFLEEFRNDFLELLRRCFGTKRVHNNVVV<

Parental  NEYISHREHIHMNATQWETLTDFT-KWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLD
          .EYIS..EHIHMNATQWETLTDFT.KWLGR.GLCKVDE.PKGW.IQYIDRDPETI..QLELE.K.KQ.LD
Retrocopy DEYISS*EHIHMNATQWETLTDFT<KWLGRDGLCKVDEMPKGWCIQYIDRDPETICWQLELERKNKQGLD

Parental  DEEKTAKFIEEQVRRGLEGKEQEAPVFTELSRENDEEKVAFNLNKGASSSTATSSKSSSLGPSALKVIEA
          DE.K.AKFIE.QVRR.LEG...EAP...ELSREND.EKV.FN.NK.A.SSTATS.KSSSLGPSALKVI..
Retrocopy DE*KIAKFIEQQVRRDLEGEAKEAPILAELSRENDDEKVTFNWNKRAQSSTATSPKSSSLGPSALKVIGM

Parental  TASVKRKEPSHSSAQSKEKKKKK
          .ASVK...P.....Q.K....K.
Retrocopy AASVKWNLPITQRNQKKKRRWKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1186 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000004280	1 retrocopy	retro_acar_162,
Cavia porcellus	ENSCPOG00000010515	5 retrocopies	retro_cpor_279, retro_cpor_281, retro_cpor_818, retro_cpor_987, retro_cpor_989,
Dipodomys ordii	ENSDORG00000003732	2 retrocopies	retro_dord_344, retro_dord_657,
Ficedula albicollis	ENSFALG00000001842	1 retrocopy	retro_falb_26,
Myotis lucifugus	ENSMLUG00000002261	1 retrocopy	retro_mluc_1186 ,
Rattus norvegicus	ENSRNOG00000026690	1 retrocopy	retro_rnor_2665,
Taeniopygia guttata	ENSTGUG00000002119	1 retrocopy	retro_tgut_9,